Bifidobacterium subtile: BS3272_06745
Help
Entry
BS3272_06745 CDS
T07068
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsue
Bifidobacterium subtile
Pathway
bsue03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BS3272_06745 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsue03400
]
BS3272_06745 (mfd)
Enzymes [BR:
bsue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BS3272_06745 (mfd)
DNA repair and recombination proteins [BR:
bsue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BS3272_06745 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOL37610
LinkDB
All DBs
Position
complement(1576839..1580462)
Genome browser
AA seq
1207 aa
AA seq
DB search
MDRVAADSTTQNAAAGAAAPSGGRRKDAAPISDHQSLIGVLESLERDPSFKSLVNGDIEQ
PESKTDPSIVVGAPSGLRPAIAAAAAAARHAAVVLVVASSREAEETVESLRSWYEDDPNA
IAQFESWETLPHERLSPRADTVASRMAVMRRLKHPQSGSDMFGPIQILVMPVRSLIQPVV
AGLGDVEPLVFEQGKELPLDEAAGRLVENAYTRVDLVMDRGEFAVRGGILDVFPPTAPHP
VRIEFFGDEIDSIREFHVSDQRTYGDDMPGIWATPCRELQLNNAVRERAKSLIGRIPNAD
DMLESIANAIPVEGMESLMPALIDDMEPVAGLLPDNALMLLSDPEKLRRAAEDLTKTANE
FLAASWHVAAAGHGAGAPISFEQASFLDYDETISALEFSRHEVIQLTSFGVDASRPGHVQ
LDAQDPAQFRGDEAKASHGIELLIADGYAVTVTSPAQGTLSRLKRVINETGITKFECIRS
HAIDGFVDNAAKVALLTERDITGRISAGTQAKTPKRRRKAIDLVELKTGDYIVHEQHGIG
RFVEMRQRTIGVGANKTTREYLVIEYAPSKRNAPPDKLFIPTDQLDQVSKYIGAEAPKLN
KLGGSDWAATKAKARKHVHEIAEDLVKLYSARQSTAGFAFSPDTPWQKELEDAFPYQETA
DQLTTIDEVKADMEKSVPMDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQ
QHYETFTERYEGFPVKVAALSRFQSTKEINETLKGLADGTVDLVIGTHKLLNPKIKFKDL
GLLVIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDR
LPVLTYVGPYEDAQVKASINRELLRGGQVFYVHNRVEDIGRIAAKIHELVPEARIGVAHG
KMGEKQLDGVIRDFWHRDVDVLLCTTIIETGLDISNANTLLVDHADRFGLSQLHQLRGRV
GRGRERAYAYFLYDPAKPMTQQSHDRLETIAQNTALGSGFDVAMKDLELRGTGNLLGGEQ
SGHIEGVGFDLYVRMVSEAVEQYKEPERHEPVAVTIDLPIEASIPVDYIDSDKLRLEAYR
KLAAARSEQDLADLREELADRYGALPQEFETLFDVARLRAKARGLGISEIMTQGNRVRVG
KIDPPESLQMRMSRIYRGMQYRLVTHTMLIPAPFAGSLGSAPMSSEQIMRWTEQLLEDLA
WKGTPRG
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggatagggtagcggcggatagcacaacgcagaatgcagcggcaggcgcagcagcacca
tcaggcggaaggcgcaaagacgccgctcccatttccgatcatcagtcgctgatcggcgtc
ctcgaatcgctcgaacgcgacccatcgttcaagtctctggtcaatggcgacatcgagcag
cctgagtcgaaaaccgaccccagcatcgtcgtcggcgcacctagcggtctacgcccggcg
atcgcggcagctgctgcggcggctcggcatgctgcggttgtgcttgtcgtggcatccagc
cgcgaggccgaggaaaccgtggaatcgctgcgctcctggtatgaggacgacccgaatgcc
atcgcccagttcgaatcctgggagaccttgccgcacgagcgactctctccccgcgctgac
actgtggccagccgcatggccgtcatgcgccggttgaagcatccgcagtccggcagcgat
atgttcgggccgattcagatactcgtgatgccggtgcgctcgctgattcagccggtggtg
gccggactcggcgacgtggaaccgctggtcttcgagcaaggcaaagagctgccgcttgac
gaggccgcaggcagactggtcgaaaacgcctatacacgcgtcgacttggtgatggatcgc
ggcgaattcgcggtgcgcggcggcatcctcgacgtctttccgcccactgcgccgcatccg
gtgcgcatcgagttcttcggcgacgaaatcgattccatccgcgagttccacgtttccgac
cagcgcacgtatggcgacgacatgcccggaatctgggccacgccctgccgcgagctgcag
ctcaataatgcggtgcgtgagcgggcgaagtcgctcatcggccggattcccaacgccgac
gacatgctcgaatcgatcgccaacgcgataccggtcgaaggcatggaatcgctcatgccc
gcgctcatcgacgatatggagccggtcgccgggctgttgcctgacaatgcgcttatgctg
ctttccgacccggagaagctgcgccgtgccgctgaggatctgacgaaaaccgcgaacgaa
ttcctcgccgccagctggcatgtggcagcagccgggcatggcgcgggcgcgccgatcagc
ttcgagcaggcgagtttcctcgactatgacgagactatcagcgcgttggaattctcccgt
cacgaggtcattcagctcacgtccttcggcgtggatgcgagccggccgggtcacgtgcag
ctcgatgcgcaggatcccgcgcagttccgcggcgatgaggccaaggcctcgcatggcatc
gaattgctgattgctgacggctatgcggtgacggtcacctcgccggcgcagggcacgctg
tcgcgcttgaagcgcgtgatcaacgaaaccggcatcacgaaattcgagtgtatccgctcg
cacgccattgatggcttcgtggacaacgccgccaaagtcgcgctgctcactgagcgcgac
atcaccgggcgcatcagtgctgggacgcaggcaaaaacacccaagcgccggcgcaaggcc
atcgacttggtggagctcaaaaccggcgattacatcgtgcacgagcagcacggcatcggg
cgtttcgtcgagatgaggcagcgcacgattggcgtcggtgcgaacaagaccacgcgcgaa
tacctcgtcatcgagtatgcgccttcgaagcgcaacgctccgcccgacaagctgttcatc
cccaccgaccagctcgaccaggtcagcaaatacatcggcgccgaagccccgaagctcaac
aagctgggcggctcggactgggcggcgaccaaggccaaggcgcgcaagcatgtgcatgag
atcgccgaggatctggtcaagctctactcggcgcggcagagcacggccggattcgccttc
agccccgacacgccgtggcagaaggagcttgaggacgccttcccctaccaggagaccgcc
gaccagctcacgaccatcgacgaagtcaaggccgacatggagaagtccgtgccgatggac
cggctcatctgcggcgacgtgggcttcggcaaaaccgaaatcgcggtgcgggccgccttc
aaggcgattcaggacggcaagcaggtggctgtgctggtgccgacgaccctgctggtgcag
cagcattacgagaccttcaccgagcgctacgagggcttcccggtcaaggtggcggcgctg
agccgcttccaaagcaccaaggagatcaacgagactctcaaaggcctggcggacggcacg
gttgacctcgtgatcggcacgcataagctgctcaaccccaaaatcaagttcaaggatctc
gggctgctcgtcatcgatgaggagcagcgcttcggtgtcgagcacaaggagacgctcaag
gcgctgcgcaccaacgtcgatgtgctctcgctctcggccactcctatcccgcgcactttg
gagatggccgtcactggcatccgcgagatgtcgacgctggcgaccccgcccgaggaccgg
cttccggtgctcacctacgtcggaccgtatgaggatgcgcaggtgaaggcgtccatcaac
cgcgagctgctgcgcggcgggcaggtattctacgtgcacaatcgcgtggaggatatcggc
cgcatcgccgcgaagattcacgagctggtgcccgaagcgcgcatcggcgtcgcccacggc
aagatgggggagaagcagctcgacggagtcatccgcgacttctggcatcgcgatgtcgac
gtgctgctgtgcacgaccatcatcgaaaccggcctcgatatctcgaacgccaacacgctg
cttgtcgaccatgccgaccgcttcgggctcagccagctgcaccagctgcgcgggcgcgtc
ggtcgcgggcgcgaacgcgcgtatgcgtacttcctctacgacccggccaagccgatgact
cagcagtcgcacgatcgcctggagaccatcgcgcagaacaccgcgctgggctcgggcttc
gacgtggcgatgaaggatctggagctgcgcggcaccggcaacctgcttggcggcgagcag
agcgggcatatcgaaggcgtcggcttcgacctgtacgtgcgcatggtttccgaggccgtg
gagcagtacaaggagccggagcgccacgagccggtcgccgtcaccatcgacttgccgatt
gaggcgtcgattccggtggattacatcgactccgacaagctgcgtcttgaggcctaccgc
aagctggccgccgcgcgcagcgagcaagatcttgccgatttgcgcgaggagctggccgac
cgttatggcgcgttgccgcaggagttcgagacgcttttcgacgtggcgcggctgcgggcc
aaagcacgagggctgggcatcagcgaaattatgacgcagggcaatcgcgtgcgcgtaggc
aaaatcgacccgcccgaatcgctgcagatgcgcatgtcgcgtatctaccgcggcatgcag
taccgccttgtcacccacaccatgctcatccctgcgcctttcgccggttcgctcggctcc
gcgccgatgagcagcgagcagatcatgcgctggaccgagcagctgctcgaggatttggcg
tggaaggggacgcctcgggggtga
DBGET
integrated database retrieval system
