Bacillus subtilis XF-1: C663_1379
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Entry
C663_1379 CDS
T02459
Symbol
ykoU
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsx
Bacillus subtilis XF-1
Pathway
bsx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C663_1379 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsx03400
]
C663_1379 (ykoU)
Enzymes [BR:
bsx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C663_1379 (ykoU)
DNA repair and recombination proteins [BR:
bsx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C663_1379 (ykoU)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGE63191
UniProt:
A0AA85ZQY9
LinkDB
All DBs
Position
complement(1408388..1410223)
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AA seq
611 aa
AA seq
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MAFTMQPVLTSSPPIGAEWRYEVKYDGYRCILRIHSSGVTLTSRNGVELSSTFPEITQFA
KTAFQHMEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRPDKIQESANARPCCFLAFD
LLERSGEDVTLLSYLDRKKSLRELISAAKLPASPDPYAKETIQSIPCYDHFDQLWEMVIK
YDGEGIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGIMTPI
ASVSHGMRDEEKSAIREIMEQHGHQTPSGGFTLEPSICAAVQYLTILQGTLREVSFVGFE
FQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYMIEVSDSLLPFLK
NRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEHIVCEDMSTLLWLCNQLALE
FHVPFQTIKSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLLDSFGITSYPKLSGNKGIQ
LYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTI
ICPYSTRGNELGTVAAPLYWHEVQSSLTPALFTIDTVINRIKKQGCPFFDFYRNPQDEPL
SAILHQLKKKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttaccatgcagccggtcctaacttcgtcaccgccaatcggagcagaatggcgt
tacgaagtaaaatatgatgggtaccgctgtattctccgcatccattcttcaggtgtgacc
ttaaccagcagaaatggtgtggagctcagcagcaccttccctgaaatcacacaattcgcc
aaaactgcctttcagcacatggaaaaagagcttccgctgacacttgatggtgaaatcgta
tgtttggtgaatccttgtcgtgcagattttgaacaccttcaagtgcgggggcgtttgaaa
aggccagacaagattcaggaatcggcaaacgcgcggccgtgctgctttctcgcctttgat
ttgttagagcgaagcggagaagatgtaacgcttctttcgtatttggaccgcaaaaaatcg
ctgcgtgaactcatatccgcagcaaagcttcctgcatctccagatccttacgcaaaagaa
accattcaatccattccctgttatgatcattttgatcaactctgggagatggtaataaaa
tatgacggagaaggaattgtagcgaagaaaacaaacagcaaatggcttgaaaagaagcgg
tcgtccgattggctcaaatataaaaactttaaacaagcttatgtttgcataacagggttc
aaccctaacaacgggtttctgacggtatcagtattaaaaaacggaataatgacaccgatt
gcctctgtctcgcacggaatgcgcgatgaggaaaaaagcgctatacgcgagattatggaa
cagcacggacatcaaacaccctcaggcggatttacgcttgaaccttcgatttgtgcagct
gttcaatacttaacaattctccaaggcacattaagagaggtatcgtttgtcggtttcgaa
ttccaaatggactggaccgaatgcacgtatgcgcaagtcatacgacactccaaaccggtt
cacccaaagctgcagttcacaagcctggataaaatcatatttgaaaagaataaaaaaaca
aaagaagattttattcagtatatgattgaagtcagtgactccctgctcccatttctgaaa
aaccgggctgtcaccgtcatccgctatccgcatggatctaggagcgaatcatttttccaa
aaaaacaagccggactatgcgccggattttgttcaatctttctatgatggaagccatgaa
catattgtctgtgaggatatgtctacattgctatggctttgcaaccagcttgctttggag
tttcacgttccttttcaaaccattaaaagcaggcgtccggctgagattgtcattgattta
gacccgccttcgcgagatgactttcttatggccgtgcaggccgcaaatgaactgaagcgg
ctgttggattcctttggcatcacatcgtacccgaagctgtccggcaacaaaggcatccag
ctttatattcccttgtctcccgaggcatttacgtatgaagaaacacgccaatttacgcag
ttgatcgcagagtactgcaccaatgcatttcccgagctatttaccactgaacgcttgatt
aaaaacagacacggcaaattgtatcttgattatttgcagcatgcagaaggaaaaacgatt
atctgtccctattcgacgagaggaaatgagcttgggactgttgcagccccgctctactgg
catgaggtgcaatcatctttaacacccgctctgtttacaattgatacggtcatcaatcga
attaagaagcagggctgcccattttttgatttttaccgcaacccgcaagacgaaccgctt
agcgctattttacatcagttgaagaaaaagagctga
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