KEGG   Bradyrhizobium symbiodeficiens: CIT39_24695
Entry
CIT39_24695       CDS       T06284                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bsym  Bradyrhizobium symbiodeficiens
Pathway
bsym03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bsym00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CIT39_24695 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsym03400]
    CIT39_24695 (ligD)
Enzymes [BR:bsym01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CIT39_24695 (ligD)
DNA repair and recombination proteins [BR:bsym03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CIT39_24695 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: AWM09318
UniProt: A0A2U8QJ54
LinkDB
Position
complement(5219222..5221903)
AA seq 893 aa
MLQKLSTYRQKRDFEKTPEPSGKTAVTPSKQRRFVIQKHDASRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESEDPERGFK
KGDLKFTLHGDKLHGSWVLVRMRNDRSGGKRTNWLLIKHRDEYAAEGEDILSEDKSVASG
RAMEQIAEGKGRAPKPFMLAKGARTRADAVWQSNRAEEAKGQTVKPAPRKALKGSKIVKT
RAAKKKASTATNAKKVSEMPDFVAPQLCTLVERPPAGEGWCHEIKFDGYRVQLRVEDGKA
TLKTRKGLDWTGKFGSIAEEAAALPDVVIDGEIVALDHNGAPNFSSLQAALSDGKTDDLI
FFAFDLLFAEGQDYRRLPLAERKAQLKKLLEKRKRKSAQIRYVEHFESGGDAVLQSACKL
ELEGVVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVQRGDHLAF
VGMVGTGFGADKVKRIMPSLKAMAAKESPFGGKNAPKKGREVHWLKPELVAEIEFAGFTA
DGNIRQAAFKGLRQDKPAEEVEAETPVDTELAEPKAGKRATKTAKRSKDAGTAEVMGVVI
SKPDKELWPDGGDGEGVTKLDLARFFEAVGSWMIEHLKGRPCSIVRAPDGIGGETFFQRH
AMQGTSNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVFD
LDPAPDVGFADVVEAAKDMRQRLVDLGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAK
AFAQGVCQWMANDDPERYLLNMSKKLREGKIFLDYLRNDRMSTAVAPLSPRARAGATVSM
PVTWAQVKSDLDPKRYTLRTVPGLLPRSKAWEGYDDAAASIKAAIKKLAGKMK
NT seq 2682 nt   +upstreamnt  +downstreamnt
gtgctgcagaaactctcaacctatcgacagaaacgtgatttcgagaagacgccggagccg
tcgggcaagacggcggtgacgccgtcgaagcagcggcgcttcgtgatccagaagcacgat
gcgagccggctgcattacgatctcaggctcgaattcgacggcgtgttcaagtcctgggcg
gtgaccaagggcccctcgctcgatccgcacgacaagcggctggcggtcgaggtggaagac
cacccgctcgactatggcgatttcgaaggcacgattccggaagggcagtacggcggcggc
acggtgatgctgtgggatcgcggcacctgggagtcggaagatcccgaacgcggcttcaag
aagggcgatttgaagttcaccctgcatggggacaagctgcacggcagctgggtgctggtg
cgcatgcgcaatgaccgcagcggcggcaagcgcaccaattggctcctgatcaagcaccgc
gacgaatatgcggccgagggcgaggacattctcagcgaggacaagtcggtcgcctccggc
cgggcgatggagcagatcgccgagggcaaggggcgcgcgccaaagccgttcatgctggcc
aagggcgccaggaccagggccgacgcggtctggcagtccaaccgggccgaggaagcgaag
gggcaaactgtcaagccggcgccgcgcaaggcattgaagggcagcaagatcgtcaagacc
agggcggcgaagaagaaggcctcgacggcgacgaatgccaaaaaagtctcggagatgccg
gacttcgtcgcgccgcagctctgtacgctggtcgaacggccgccggccggcgagggctgg
tgccacgaaatcaagttcgacggctatcgtgtgcagctccgggtcgaggatggcaaggcg
acgctgaagacgcgcaagggtctcgactggaccgggaagttcggctccatcgcggaggag
gcagccgcgctgccggacgtggtgatcgacggcgagatcgtcgcactcgaccacaatggc
gcgccgaacttctcctcgcttcaggctgcgttgtccgatggcaagactgacgacctgatc
ttctttgcgttcgaccttctgttcgccgaggggcaggattaccggcggctgccgcttgcc
gagcgcaaggcgcagctcaagaagctgctggagaagcgcaagcgcaaatcggcccagatc
cgctatgtcgaacatttcgagagcggcggcgatgcggtgctgcaatcggcctgcaagctc
gagctcgaaggcgtggtgtcgaagaagctggacgcgccctatcgctccggccgcacagaa
agctggaccaaggcaaagtgccgcgccggccatgaggtcgtgatcggcggctacaagacg
accaacggcaaattccgttccctgatggccggcgtgcagcgtggcgatcatctcgccttc
gtcggcatggtcggcaccggcttcggcgccgataaggtcaagcgcatcatgccgtcgttg
aaggcgatggcggccaaggaaagtcctttcggcggcaagaacgcgccgaagaaaggccgc
gaggtgcactggctgaagccggagctcgtcgccgaaatcgagttcgccggcttcaccgcc
gacggcaatatccgccaggccgcgttcaagggcttgcggcaggacaagccggccgaggag
gtggaggcggagacgcctgtcgacaccgagctcgccgagccaaaagccggcaagcgcgca
acgaagacggcgaagcggtcgaaagacgccggcacggccgaggtgatgggcgtcgtcatc
tccaagccggacaaggagctttggccggacggcggtgacggcgagggcgtgaccaagctg
gatctcgcgcgctttttcgaggcggtcgggagctggatgatcgaacacctgaaggggcgg
ccgtgctcgatcgtgcgtgcgcccgatggcattggcggcgagacgttcttccagcgtcat
gccatgcagggcacttcgaacctgctcgaactcgccaaagtctccggcgatcgcaaaccg
tatctgcagatcgatcgcgtcgaagggcttgccgccgtcgcgcagatcggcggcgtcgag
ctgcatccttggaattgtgcgcctgatgcttacgatacgccgggccggctggtgttcgat
ctcgatccagcgccggatgtcgggttcgccgatgtggtcgaggccgccaaggacatgcgc
cagcggctcgtcgacctcggcatggagagcttctgcaagaccacgggcggcaagggcctg
catgtggtggtgccgctgcttcacggcgcgcgcgacaaggtgagctggaaggaagccaag
gccttcgcccagggcgtctgccagtggatggccaacgacgatccggagcgctatctgctc
aacatgtcgaagaagctgcgcgagggtaagatctttctcgattatctccgcaacgaccgg
atgtcgacggcggtggcgcccctgtcgccgcgggcgcgcgcgggggccacggtctcgatg
cccgtcacgtgggcgcaggtgaagagcgatctcgatccgaagcgctatacgctgcgaacc
gtcccgggcctgctgccgcggtcgaaggcgtgggagggctatgacgatgcggccgcctcg
atcaaggcggcgatcaaaaagcttgcgggaaaaatgaagtag

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