Bradyrhizobium symbiodeficiens: CIT39_24695
Help
Entry
CIT39_24695 CDS
T06284
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsym
Bradyrhizobium symbiodeficiens
Pathway
bsym03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CIT39_24695 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsym03400
]
CIT39_24695 (ligD)
Enzymes [BR:
bsym01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CIT39_24695 (ligD)
DNA repair and recombination proteins [BR:
bsym03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CIT39_24695 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWM09318
UniProt:
A0A2U8QJ54
LinkDB
All DBs
Position
complement(5219222..5221903)
Genome browser
AA seq
893 aa
AA seq
DB search
MLQKLSTYRQKRDFEKTPEPSGKTAVTPSKQRRFVIQKHDASRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESEDPERGFK
KGDLKFTLHGDKLHGSWVLVRMRNDRSGGKRTNWLLIKHRDEYAAEGEDILSEDKSVASG
RAMEQIAEGKGRAPKPFMLAKGARTRADAVWQSNRAEEAKGQTVKPAPRKALKGSKIVKT
RAAKKKASTATNAKKVSEMPDFVAPQLCTLVERPPAGEGWCHEIKFDGYRVQLRVEDGKA
TLKTRKGLDWTGKFGSIAEEAAALPDVVIDGEIVALDHNGAPNFSSLQAALSDGKTDDLI
FFAFDLLFAEGQDYRRLPLAERKAQLKKLLEKRKRKSAQIRYVEHFESGGDAVLQSACKL
ELEGVVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVQRGDHLAF
VGMVGTGFGADKVKRIMPSLKAMAAKESPFGGKNAPKKGREVHWLKPELVAEIEFAGFTA
DGNIRQAAFKGLRQDKPAEEVEAETPVDTELAEPKAGKRATKTAKRSKDAGTAEVMGVVI
SKPDKELWPDGGDGEGVTKLDLARFFEAVGSWMIEHLKGRPCSIVRAPDGIGGETFFQRH
AMQGTSNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVFD
LDPAPDVGFADVVEAAKDMRQRLVDLGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAK
AFAQGVCQWMANDDPERYLLNMSKKLREGKIFLDYLRNDRMSTAVAPLSPRARAGATVSM
PVTWAQVKSDLDPKRYTLRTVPGLLPRSKAWEGYDDAAASIKAAIKKLAGKMK
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcagaaactctcaacctatcgacagaaacgtgatttcgagaagacgccggagccg
tcgggcaagacggcggtgacgccgtcgaagcagcggcgcttcgtgatccagaagcacgat
gcgagccggctgcattacgatctcaggctcgaattcgacggcgtgttcaagtcctgggcg
gtgaccaagggcccctcgctcgatccgcacgacaagcggctggcggtcgaggtggaagac
cacccgctcgactatggcgatttcgaaggcacgattccggaagggcagtacggcggcggc
acggtgatgctgtgggatcgcggcacctgggagtcggaagatcccgaacgcggcttcaag
aagggcgatttgaagttcaccctgcatggggacaagctgcacggcagctgggtgctggtg
cgcatgcgcaatgaccgcagcggcggcaagcgcaccaattggctcctgatcaagcaccgc
gacgaatatgcggccgagggcgaggacattctcagcgaggacaagtcggtcgcctccggc
cgggcgatggagcagatcgccgagggcaaggggcgcgcgccaaagccgttcatgctggcc
aagggcgccaggaccagggccgacgcggtctggcagtccaaccgggccgaggaagcgaag
gggcaaactgtcaagccggcgccgcgcaaggcattgaagggcagcaagatcgtcaagacc
agggcggcgaagaagaaggcctcgacggcgacgaatgccaaaaaagtctcggagatgccg
gacttcgtcgcgccgcagctctgtacgctggtcgaacggccgccggccggcgagggctgg
tgccacgaaatcaagttcgacggctatcgtgtgcagctccgggtcgaggatggcaaggcg
acgctgaagacgcgcaagggtctcgactggaccgggaagttcggctccatcgcggaggag
gcagccgcgctgccggacgtggtgatcgacggcgagatcgtcgcactcgaccacaatggc
gcgccgaacttctcctcgcttcaggctgcgttgtccgatggcaagactgacgacctgatc
ttctttgcgttcgaccttctgttcgccgaggggcaggattaccggcggctgccgcttgcc
gagcgcaaggcgcagctcaagaagctgctggagaagcgcaagcgcaaatcggcccagatc
cgctatgtcgaacatttcgagagcggcggcgatgcggtgctgcaatcggcctgcaagctc
gagctcgaaggcgtggtgtcgaagaagctggacgcgccctatcgctccggccgcacagaa
agctggaccaaggcaaagtgccgcgccggccatgaggtcgtgatcggcggctacaagacg
accaacggcaaattccgttccctgatggccggcgtgcagcgtggcgatcatctcgccttc
gtcggcatggtcggcaccggcttcggcgccgataaggtcaagcgcatcatgccgtcgttg
aaggcgatggcggccaaggaaagtcctttcggcggcaagaacgcgccgaagaaaggccgc
gaggtgcactggctgaagccggagctcgtcgccgaaatcgagttcgccggcttcaccgcc
gacggcaatatccgccaggccgcgttcaagggcttgcggcaggacaagccggccgaggag
gtggaggcggagacgcctgtcgacaccgagctcgccgagccaaaagccggcaagcgcgca
acgaagacggcgaagcggtcgaaagacgccggcacggccgaggtgatgggcgtcgtcatc
tccaagccggacaaggagctttggccggacggcggtgacggcgagggcgtgaccaagctg
gatctcgcgcgctttttcgaggcggtcgggagctggatgatcgaacacctgaaggggcgg
ccgtgctcgatcgtgcgtgcgcccgatggcattggcggcgagacgttcttccagcgtcat
gccatgcagggcacttcgaacctgctcgaactcgccaaagtctccggcgatcgcaaaccg
tatctgcagatcgatcgcgtcgaagggcttgccgccgtcgcgcagatcggcggcgtcgag
ctgcatccttggaattgtgcgcctgatgcttacgatacgccgggccggctggtgttcgat
ctcgatccagcgccggatgtcgggttcgccgatgtggtcgaggccgccaaggacatgcgc
cagcggctcgtcgacctcggcatggagagcttctgcaagaccacgggcggcaagggcctg
catgtggtggtgccgctgcttcacggcgcgcgcgacaaggtgagctggaaggaagccaag
gccttcgcccagggcgtctgccagtggatggccaacgacgatccggagcgctatctgctc
aacatgtcgaagaagctgcgcgagggtaagatctttctcgattatctccgcaacgaccgg
atgtcgacggcggtggcgcccctgtcgccgcgggcgcgcgcgggggccacggtctcgatg
cccgtcacgtgggcgcaggtgaagagcgatctcgatccgaagcgctatacgctgcgaacc
gtcccgggcctgctgccgcggtcgaaggcgtgggagggctatgacgatgcggccgcctcg
atcaaggcggcgatcaaaaagcttgcgggaaaaatgaagtag
DBGET
integrated database retrieval system