Bos taurus (cow): 100124507
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Entry
100124507 CDS
T01008
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bta
Bos taurus (cow)
Pathway
bta03030
DNA replication
bta03410
Base excision repair
bta03420
Nucleotide excision repair
bta03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100124507 (LIG1)
03410 Base excision repair
100124507 (LIG1)
03420 Nucleotide excision repair
100124507 (LIG1)
03430 Mismatch repair
100124507 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bta03032
]
100124507 (LIG1)
03400 DNA repair and recombination proteins [BR:
bta03400
]
100124507 (LIG1)
Enzymes [BR:
bta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100124507 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
100124507 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100124507 (LIG1)
DNA replication proteins [BR:
bta03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100124507 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100124507 (LIG1)
DNA repair and recombination proteins [BR:
bta03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100124507 (LIG1)
NER (nucleotide excision repair)
Other NER factors
100124507 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
100124507 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
100124507
NCBI-ProteinID:
NP_001096018
BGD-bta:
BT16412
Ensembl:
ENSBTAG00000014595
VGNC:
30882
UniProt:
A4IFC8
LinkDB
All DBs
Position
18:complement(54865681..54892962)
Genome browser
AA seq
916 aa
AA seq
DB search
MQRSIMSFFQPKKEGKAKKPEKETAKSIRETESPPKVALKERNRVVSEGDSPVKRPGRKA
TRVLGSEGEEEEEEAPTTPRSQKPASDSPQASPPSPVTLPESSPSHSKPSPAVASPSGIP
KRRTARKQLPKRTFQDVLKEQGEDKDPETKKKKEEEAETPIESLPEPEGDDKEEVEGGDQ
PTTPPEPRKTSTESLTESVSEPGVTVKQEPQEDGQAQPPPKTPKTLSSFFSPRKPAVKKE
AKEEGPGALRKDEIKGHVDPASYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEVS
ARLRMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQATG
RQLESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFAKFRDIAQLAGSASTTKK
IDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPSQECPPAVVDA
GKGKTAEARKTWLEEQGMILKQTFCEVPDLERIVPVLLEHGLERLPEHCRLSPGVPLKPM
LAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIIS
RIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLI
YLNGKSLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLM
VKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLASY
DEESEEFQAICKLGTGFSDEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSDVWE
VKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEQATTSAQVAGLYKKQSQI
QNQQGAEPDSEQEEFY
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccagcccaagaaagagggcaaagcgaagaagcca
gagaaggagacagccaagagcatcagagaaacagagtcccctccgaaggtggcgctgaag
gagcggaatcgagtggtgtctgagggtgactctccagtgaagaggccagggaggaaggcg
acccgggtcctgggcagcgagggcgaggaggaggaagaggaagcccccaccacccccaga
agccagaagcctgcttcagactctccacaggcctcgcctcccagtcctgtcacactgcct
gagagcagcccttcccactccaaaccctccccagcagttgcatccccatcagggatcccg
aagcgtcgcacggcccggaagcagcttcccaaacggacatttcaagatgttctgaaagag
cagggcgaggacaaggatccagaaactaagaagaagaaggaggaagaagcggagacacca
atagaaagcctcccagagcctgaaggggacgacaaggaggaagtggaaggtggggaccag
cccacgacgccccctgagccccggaagacctccacagagtccctgacagaaagcgtctca
gagcccggggtgacggtgaagcaggaaccacaggaggatggccaggctcaaccgcccccc
aaaactccaaagaccctcagcagtttcttctccccccggaagccagctgtcaaaaaagaa
gcgaaagaagaaggacctggtgctctgagaaaggacgagatcaagggacacgtggaccca
gcgagctataatcctgccaagaacaactatcaccccatcgaagatgcctgctggaaggcg
ggccagagggttccttatctggctgtggcccgggcgttcgagaagatcgaggaggtctct
gctcggctccggatggtggagacgctgagcaacctgctgcgctccgtggtggccctgtca
cctgctgacctcctgcccgtcctctacctgagcctcaaccgcctggggccgccccagcag
ggcctggagctcggcatcggagagggcatcctcctcaaggcagtggcccaggccacgggt
cggcagctggagtccgtccgggccgaggtggccgagaagggtgatgtggggctggtggcc
gagagcagccgcagcacccagaggctcgtgctgcccccgcctgcgctcactgccgccggc
gtcttcgccaagttccgggacatcgcgcagctggcaggcagcgcttccacaaccaagaag
attgacgtcatcaaaggcctctttgtggcctgccgtcactcagaggcacgtttcattgcc
agagccctgagtggacggctgcgcctcgggttggctgagcagtcggtgctggcggccctc
gcccaggccgtgagcctcacgccccccagtcaagaatgcccccccgccgtggtggacgcc
gggaagggcaagacggcagaagccagaaagacgtggctggaggagcaaggcatgatcctg
aagcagactttctgtgaggtacctgacctggagcggatcgtccccgtgcttctggaacac
ggcctggagcggctcccggagcactgcagactgagcccaggggttcccctgaaaccaatg
ttggcccaccccacccggggtgtcagtgaggtcctgaagcgctttgaggaggcagctttc
acctgcgagtacaaatacgacgggcagagggcacagatccacgttctggaaggcggggag
gtaaagatcttcagcaggaatcaggaggacaatactggaaggtaccccgacattatcagc
cgcatccctaagattaaactcccatcggtcacatccttcatcctagacacagaagctgta
gcttgggaccgggaaaagaagcagatccagccattccaagtcctcaccacccgcaaacgc
aaggaggtggacgcggcggagatccaggtgcaggtgtgtctgtatgccttcgatctcatt
tacctcaacggaaagtccctggtacgtgagcccctctcccgacgccggcagctgctccgg
gagaacttcgtggagacggagggcgagttcgtctttgccacctccctagacaccaaggac
acggagcagatcgcagagttcttggagcagtcggtgaaagactcctgcgaggggctgatg
gtgaagaccctggacgtggacgccacctacgagatcgccaagaggtcacacaactggctc
aagctgaagaaggactacctcgagggtgtgggcgacaccctggacctcgtagtgattggt
gcctacctgggcaaggggaaacgggccggccggtacgggggcttcctgctggcctcctat
gacgaggagagcgaggagttccaggccatctgcaagctcggaactggcttcagtgacgag
gagctggaagagcaccaccagaggctccaggccttagtgctgcccaccccgcgctcctac
gttcgggctgacggtgcggtggcccccgaccactggctggaccccagcgacgtgtgggag
gtgaagtgcgcggacctctccctgtcccccatctaccctgcggcccgaggcctggtggac
agcgagaaggggatctccctccgcttccctcggtttattcgcgtccgtgaggataagaag
ccggagcaggccactaccagtgcccaggtggccggtctgtacaagaagcagagtcagatt
cagaaccagcagggtgcggagccggactccgagcaggaagagttctactag
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integrated database retrieval system
