Bemisia tabaci (sweet potato whitefly): 109043746
Help
Entry
109043746 CDS
T06019
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Pathway
btab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109043746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
btab03041
]
109043746
Enzymes [BR:
btab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109043746
Spliceosome [BR:
btab03041
]
Complex C
Other components
Step II factors
109043746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
ATPase
AAA_14
AAA_30
AAA_7
AAA_16
AAA_23
ATPase_2
TssR_VWA
ABC_tran
Motif
Other DBs
NCBI-GeneID:
109043746
NCBI-ProteinID:
XP_018916589
LinkDB
All DBs
Position
Unknown
AA seq
1222 aa
AA seq
DB search
MAEDIYRLEGNNEEKGGLIIKKKPDPNATFKFKVPQTSLLGLDRLADVKRKERESLIKDA
EKKSKLKSYADSDDEGQDIEASPSPHSIPKKDEKRHYRPALDETPTHTGGISQEAKERLE
NRLRKERERGIYVSTSEKRKREREAEDREERRSSRGRDDRHRSRDRDHSRSHRDRKEFKQ
ERRSRDRDEYRRHDDTSERRFRVKDEYPTPRYRVKDSPSKTNWDDDSGTPLRKSSWDYPT
PKNFALKDGSQSDWSYKREERSHRMYDDTPRPTPAHKYNVWAKERRRTGATPLPGKEGEV
EWGSPEDREAWEEEQKRLDREWYGMDDGVAEENNPFSNLSEEYVKKKELQLEQRKKKRMS
AQQRQISKDNELWERNRMLTSGVVQSINVDDDFDEENIDRVHLLVHNIVPPFLDGRIVFT
KQPEPVIPVKDPSSDMALVARKGSRLVRVYREQKERRKAQKKHWELAGTSLGNIMGIEKK
DEEDSKQGKDGETDYKTDQKFADHMRDSSNASSDFAKKKTITEQRRYLPVFAVRQELLNV
IRENNIVIIIGETGSGKTTQLTQYLHEDGYSKYGMIGCTQPRRVAAMSVAKRVSDEMNTT
LGDDVGYTIRFEDCTSEKTVIKYMTDGILLRESLREAELDNYSAIIMDEAHERSLSTDVL
FGLLREVVAKRHDLKLIVTSATMDATKFATFFGNVPTFTIPGRTFPVDLFFAKNGVEDYV
DSAVKQAVQIHLQPTEGDILIFMPGQEDIEVTCEVLAERLQEIDSAPDLLILPIYSQLPS
DLQAKIFQKSSEGLRKCVVATNIAETSLTVDGIMYVVDSGYCKLKVYNPRIGMDALQIYP
ISQANANQRSGRAGRTGPGQCFRMYTEKQFKDELLVTTVPEIQRTNLANTVLLLKSLGVQ
DLLQFHFMDPPPQDNILNSLYQLWILGALDHTGTLTALGRQMAEFPLDPPQCQMLIVSTQ
MKCSADVLIIVSMLSVPSIFYRPKGREEEADSVREKFQVPESDHLTYLNVYNQWKQNNYS
ANWCNEHFIHIKAMRKVREVRQQLKDIMVQQKLEIASCGTDWDIIRKCICSAYFHQAARL
KGIGEYVNCRTGMPCYLHPTSALFGMGFTPDYVIYHELVMTAKEYMQCVTAVDGHWLAEL
GPMFFSVKETGRSGSAKRKQALEHLQEMEGQMKAAHEEIEARKKEMELKEASSVRRTEIV
TPGLMDSKGGATPRRTPARFGL
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagacatttatcgcctagaaggaaacaatgaagaaaaaggtggactcattatc
aagaagaaaccagatccaaatgccacatttaagttcaaagtaccacaaacatctctgtta
ggtcttgacagacttgcagatgtaaaacgcaaagaaagagaaagtctgatcaaagatgcg
gaaaaaaaatccaaattaaaatcttatgctgactcggatgatgaagggcaggatattgaa
gcaagtccatctcctcatagcattccaaaaaaggatgaaaaaaggcactatcggcctgca
ttagatgaaacaccaacacacacaggtggtatctcacaggaggctaaggaacgcctggaa
aaccggctgaggaaagagcgtgaaagaggaatctatgtatcaacatctgaaaagaggaaa
cgtgagcgagaagcagaggacagagaggaaaggcgaagttcgagaggtcgtgatgataga
catagaagcagagatagagatcacagtcgcagccatcgggacaggaaggagttcaaacag
gagcgaaggagcagagatcgcgatgaatacaggagacatgacgacacatcggagagaaga
ttccgagtcaaagatgagtacccaacgccgcgctatcgtgtaaaagactcaccatcaaaa
acgaattgggatgatgacagtggaacacctttaagaaaatcaagttgggactatcccacg
cccaagaactttgcccttaaagatggttcacagtctgattggtcctataaacgcgaagaa
agatctcacaggatgtatgacgacactccgcgtcccacgccagcacacaaatataatgtt
tgggccaaagaaagacgaagaactggtgctacaccacttccaggaaaagagggagaagtg
gaatggggaagtcctgaagaccgcgaagcttgggaagaggagcagaaacgtcttgatcgg
gagtggtatggtatggatgatggtgttgccgaagagaacaatccgttttcaaatcttagt
gaagaatatgtcaagaaaaaagaacttcaacttgaacaaaggaaaaagaaacgcatgtct
gcccaacaacggcaaattagcaaagacaatgaactgtgggagaggaatcgaatgttgacc
agtggagttgttcagtccatcaatgtcgatgacgatttcgatgaagaaaacattgaccga
gttcatctcctcgtccacaacatagttcctccgttcttggatggtcgtattgtcttcact
aagcagccagaacctgtcattcctgtcaaagatccaagttccgatatggctctagttgct
cgcaaaggatctaggttagtcagagtttatcgtgagcagaaagagaggcggaaagcacag
aaaaagcattgggaactagctggcacttcactcggtaacatcatgggaatcgagaagaag
gatgaagaggactcaaaacaaggtaaggatggtgaaacagactacaaaaccgaccaaaaa
tttgcagatcacatgagagattcgtccaatgcaagtagtgattttgcaaaaaagaagact
attacagaacagcggaggtatttacctgtctttgcagtgcggcaagaactgttgaatgtt
attcgagaaaataatattgtgataattattggagaaactggtagtggaaaaacaacacaa
ctgacacagtacttgcacgaagacggttacagtaaatacggaatgattggatgcacacag
ccgcggcgagtggcagccatgtcagtagccaaacgtgtctctgatgaaatgaacacaacg
ttgggagatgatgtcggttacacaatccgatttgaagattgcacgtctgagaaaactgtg
ataaaatatatgactgatggtattttattacgagaatctttacgtgaggcagaactggat
aactacagtgctatcatcatggacgaagcccatgaacgctcactcagtactgatgttctt
tttggtctgcttcgagaggttgttgcaaaaaggcacgatctaaaactgattgtaacctca
gcaacaatggacgcaacaaaatttgcaactttctttgggaatgttcctacctttacaatt
cctggccgaacattccctgttgatttgttcttcgccaagaatggtgtcgaggattatgtt
gattctgccgttaaacaggcggtgcagattcatcttcagccaactgaaggtgatatttta
attttcatgccgggacaagaggacattgaagtgacgtgcgaagtcttggcggagaggctc
caagaaattgactcagcgcctgatctcctcattctccctatatactcacagctgccatct
gatttgcaagccaagattttccaaaagtcatcagaaggactcagaaagtgcgtcgtggct
accaacattgcagagacctctcttacagtggatggaatcatgtatgtcgttgactcagga
tactgcaaattgaaagtatacaacccccgtatcggtatggacgctcttcagatctatcct
ataagtcaagccaatgctaatcaacgttcaggcagagcaggtcgaacaggacctggtcag
tgcttcaggatgtacacggagaagcagttcaaagacgaactactggtgacgacagtgcct
gaaatccaacgaacgaacttggcaaacacggttctgctacttaaatcccttggtgtccaa
gatttactacagttccattttatggacccacctccacaggacaacattctaaattccctc
taccaactttggattttgggggcgttagaccacactggaacactgactgcgttaggcagg
caaatggcagagttcccattagaccctccgcaatgtcaaatgctcatagtctcaacccaa
atgaagtgttcagcagatgttctcattatagtttcaatgttatccgttccgtccatattc
tatcgccctaagggcagggaagaggaagctgattctgtgcgggagaagtttcaagtacct
gagtctgatcatctaacttatttgaatgtttataatcagtggaaacagaacaactactca
gccaactggtgtaatgaacatttcatccacatcaaagcaatgcgaaaagtacgagaggtc
cgtcaacagttgaaagatatcatggttcaacagaagttggaaattgcatcctgtggaact
gattgggacatcattcgcaaatgcatttgctctgcttacttccatcaagctgcaaggctc
aaagggatcggcgagtatgtcaattgtcggacagggatgccgtgttacctgcaccccacc
tcggcgctttttggtatgggtttcacgccagactacgtcatttatcacgaactggtcatg
actgcaaaggagtacatgcaatgcgtgactgcagtggatggacattggttggcagagctt
ggaccaatgttcttctctgtgaaagaaacgggccgatctgggtctgccaaacggaagcag
gcgctagaacaccttcaggagatggaagggcagatgaaagctgcgcacgaagagatcgaa
gctcggaagaaagaaatggaactcaaagaggccagcagtgtcagaaggactgaaatcgtg
actccaggtctaatggattctaaaggaggtgcaactccacgcaggaccccagctcgtttt
ggtctctag
DBGET
integrated database retrieval system
