Budorcas taxicolor (takin): 128050589
Help
Entry
128050589 CDS
T08909
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
btax
Budorcas taxicolor (takin)
Pathway
btax03013
Nucleocytoplasmic transport
btax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
btax00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128050589 (UPF1)
03015 mRNA surveillance pathway
128050589 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btax03019
]
128050589 (UPF1)
Enzymes [BR:
btax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128050589 (UPF1)
5.6.2.5 RNA 5'-3' helicase
128050589 (UPF1)
Messenger RNA biogenesis [BR:
btax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128050589 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
128050589 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
128050589
NCBI-ProteinID:
XP_052498826
LinkDB
All DBs
Position
7:complement(6238392..6271769)
Genome browser
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcttggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgcgggggccccggtc
ggagccggcccgggcgcggcggccggacagctcgacgcgcaggttggtggccctgagggc
atcctgcagaacggggccgtggacgacagtgtggccaagaccagccagttgttggccgag
ttgaactttgaagaagatgaagaagatacctattacacaaaggatctccctgtacatgcc
tgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaacaccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaaatgcaaagaggtgaccctgcacaaggatgggcccctaggggagacggttctggag
tgttacaactgcggctgccgcaatgtcttcctcctcggcttcatccctgccaaggctgac
tcggttgtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcccagtggcagcccctgatccaggaccggtgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcactgcccagcagatc
aacaagctggaggagctctggaaggagaacccttctgccaccttggaggacctggagaag
cccggagtggatgaggagccgcagcacgtcctcctgcgctacgaggacgcctaccagtac
cagaacatattcgggcctctggtcaagctggaggctgactacgacaagaagctgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctctggaaagggatcggccacgtcatcaaggtccctgataattatggtgatgagatt
gctattgagcttcggagcagtgtgggtgcccctgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcatttgacagaatgcagagtgcactgaaaacctttgcc
gtggacgagacctccgtgtcgggctatatctaccataaactgcttggccacgaggtggag
gatgtgatcatcaagtgccagctgcccaagcgcttcacggcacaggggctccccgacctc
aaccactctcaggtttacgccgtgaagactgtgctgcagagaccgctgagtctgatccag
ggcccaccgggcacagggaagaccgtgacctcagccaccatcgtctaccacctggctcgg
caaggcaacgggcccgtgctggtctgtgctccaagcaacatagccgtggatcagctgact
gagaagatccaccagaccgggctgaaagtcgtgcggctctgcgccaagagccgcgaggcc
atagactccccggtgtccttcttggccctgcacaaccagatcaggaacatggacagcatg
ccagagctccagaagctgcagcagctgaaggatgagaccggggagctgtcgtcggcggac
gagaagcgttacagagccctgaagcgcactgccgagagggagctgctcatgaacgcagat
gtcatctgctgcacgtgtgtgggcgcaggagacccgaggctcgccaagatgcagttccgc
tccattttaatcgacgaaagcacgcaggccaccgagccagagtgcatggtgcccgtggtc
cttggagccaagcagctgatcctcgtgggtgaccactgtcagctgggccctgtggtgatg
tgcaagaaggcggccaaggccgggctgtcgcagtcgctctttgagcgcctggtggtgctg
ggcatccgccccatccgcctccaggtccagtaccggatgcaccccgcgctcagcgccttc
ccatccaacatcttctacgagggctctctccagaatggcgttactgcagcggatcgtgta
aagaaggggtttgactttcagtggccccaaccggataaaccaatgttcttctatgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctgaacaggacggaggctgcc
aacgtggagaagatcaccacgaagctgctgaaggcgggtgccaagccggaccagatcggc
atcatcacgccctacgagggccagcgctcctacctggtgcaatacatgcagttcagcggc
tccctgcacaccaagctctaccaggaggtggagattgccagtgtggacgcgttccagggc
cgcgagaaggacttcatcatcctctcctgtgtgcgggccaatgagcaccaaggcattgga
tttttgaatgaccccaggcgcctcaacgtggccttgaccagagcacgatatggggtcatt
atcgtgggcaacccgaaggccctgtccaagcagccgttgtggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggagggacccctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgaca
acagccatgtatgatgcccgggaggccatcatcccagggtcggtctacgaccggagcagc
cagggccggccctcgaacatgtacttccagacccacgaccagatcggcatgatcagtgcc
ggccccagccacgtggctgccatgaacatccccattcccttcaacctggtcatgccgccc
atgccaccaccggggtattttggacaagctaacgggccagccgcaggccgaggcacccca
aaaggcaagactggtcgtggggggcgccagaagaaccgctttgggcttcctgggcccagt
cagacgaacctccccaacagccaggccagccaggatgtggcgtcccagcccttctcccag
ggcgccctgacccaaggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggggatgagtttaagtcacagatc
gacgtggcgctgtcgcaagactccacataccagggcgagcgggcgtaccagcacggtgga
gtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
