Budorcas taxicolor (takin): 128068517
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Entry
128068517 CDS
T08909
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
btax
Budorcas taxicolor (takin)
Pathway
btax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
btax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128068517 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
btax03021
]
128068517 (PCF11)
03019 Messenger RNA biogenesis [BR:
btax03019
]
128068517 (PCF11)
Transcription machinery [BR:
btax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128068517 (PCF11)
Messenger RNA biogenesis [BR:
btax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128068517 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
128068517
NCBI-ProteinID:
XP_052517600
LinkDB
All DBs
Position
25:complement(13063274..13087254)
Genome browser
AA seq
1685 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIPDTKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLTQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESTRVSDMSKRDPRLKKHLQDKTDSKDDDT
KDKRKTVEKKEKDEHVKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPSRE
ERSAKRSTKQDVRDPRRIKKTEEERPQETAGQHSTKSGTEPKENVENWPSSKSTKRWKSG
WEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKPQHRLSVDANLQIPKELTVASK
RELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCSVRDSPTEENKGGLKKKPL
LSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRN
SGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSSKGVREEQRSPFNDR
FPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPGRPSVARDGPAKMIF
EGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT
PLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLR
FEGPHGQPVGGLRFENPRGQPVGGLRFEGGHGPSGAAMRFDGPHGQPSGGIRFEGPLLQQ
GVGMRFEGPHGQSVAGMRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG
PSVPGGGLRIEGPLGQGGPRFEGCHALRFEGQPGQSSLLPRFDGLHGQPGPRFERTGQPG
PQRFDGPPGQQVQPRFDGVPQRFEGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQ
TGPYNDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFD
EKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVSQPVAFGQGQQFLPVHPQNPGAFVQN
PSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAPPPAEEEEDQN
EDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDC
TPSPSKTPVENPLNIMLNIVKNELQEPSESPKVKEERIDTPPACTEESIATATEIKTEND
TVESV
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccctcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatatttcctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaaccctaagtttttaaacaaatcgcctgaagaatcttcaacacctggcacagtggtc
agttcccctagcatctccactcctcctattgttccggatatacaaaagaatcttactcaa
gagcagctaataaggcagcaattactggcaaaacaaaagcagctgttagaacttcagcag
aaaaagctggagcttgaacttgagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgtttcacag
attcccccaatggcagttaaagctcctcatcaggttcctgtgcagcctgagaaaagtcgt
ccaggtccatccttacaaattccagatacaaaaggaactaaccgggatccccgtcttaat
aggatgagtcaacactcttctcatggaaaagatcaaagtcacaggaaagaattcctaatg
aacacactgacccaatctgatattaagacaagtaaaactgtaccctctgaaaaactgaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttggattctaaatccaaatctaaatctaaatcaccgtcacctttgaaaaataaattatcc
cacacaaaagacttgaaaaatcaagaatctgaaagtacaagggtgtctgatatgagcaag
agagatccacgattaaaaaaacatcttcaggataagactgatagcaaagatgatgataca
aaggacaagagaaaaactgtagaaaaaaaggagaaagatgagcacgtgaaatcatctgaa
cacagactggtgggaagtagaaataaaatcataaatggcattgtacaaaaacaggataca
ataacggaagaatcagaaaagcaggggacaaaaccagggagatcgagtactagaaagcga
tcaagatcacgatcacccaagtctcggtcaccaattatacattctcccaagagaagggac
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacctcgacccccaaagctggg
aagattcgccagtcaggagttaaacagtcacacatggaagagtttacaccttccagggaa
gaaagaagtgcaaagagaagtactaaacaggatgttcgagatccaaggcgcataaaaaag
actgaagaggaacgaccacaagagactgcaggtcaacattctaccaagtcaggcactgag
ccaaaggagaatgtagaaaattggccaagttccaagtctaccaaaagatggaaatccggt
tgggaagaaaataaaagtttacaacagggtgatgaacatagtaaagctcctcatctaagg
catagggagagctggtcaagcactaaaggaattttgtcacctcgagccccaaagccgcag
catcgattaagtgtagatgccaatcttcagattcctaaagagttaactgttgcaagcaaa
agagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgag
ttccttgttgttgtgcatcaaatacgacagctatttcagtatcaagaaggtaaacataga
tgcagtgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctc
ttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggtt
cagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgact
gatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaat
agtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcct
atatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaagacat
gacgagcaagtctcttctaaaggtgtacgagaagagcagagatcaccattcaatgatcgt
tttccacttaaacgacctagatatgaagattcagacaaaccatttgtagatagccctgcg
tcaagattcgccggccttgatacaaatcagcgacttacggctttagctgaagatagaccg
ttatacgatggacctggcaggccatcagtagcgagagatggcccagccaagatgattttt
gaaggacctaataaattaagccctagaattgatggacctcctacaccgggttctcttcgg
tttgatgggtcaccaggacagatggggggaggtggccctttgagatttgaaggaccacaa
ggccagttaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtcgggaca
ccgctgcgatttgagggtccgattggtcaagcaggaggaggtggcttccgatttgaaggt
tcccctggtctgaggtttgagggatctgcaggtggtttgcgatttgaagggccagggggc
cagcctgtgggcggtctcagatttgaaggacatcggggtcaacctgtgggtggtcttagg
tttgagggacctcatggtcagcctgtgggtggacttcgatttgagaatcctcgaggtcag
ccagtaggtggacttagatttgagggaggtcatggtccatcaggagctgcaatgaggttt
gatggacctcatggtcagccatcaggtgggatcagatttgagggcccattgttacagcag
ggagttggaatgaggtttgagggcccccatggtcagtcagtagctggtatgaggtttgaa
ggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcagccaggg
gttgggatcaggtttgaaggaccgttagtccaacaaggaggtggaatgaggtttgagggt
ccttcggtcccaggaggtggcctgagaatcgaaggacctctgggtcaaggtggtccaagg
tttgaaggttgtcatgctttaaggtttgaagggcagccaggtcagtcatcactcctgcca
agatttgatggattgcacggtcagccaggtcctagatttgaaagaactggtcagccaggc
ccacagaggtttgatggacctcctggacagcaggttcaaccaagatttgatggtgtgcct
cagagatttgaaggcccacaacaccagcaagcatcaaggtttgatattcctcttggtctt
caaggcacacgatttgacaatcatccttcacagaggcttgagtcagtatctttcaatcag
actggcccatataatgatccacctggcaatgcttttaatgccccatcccaaggactacag
ttccaaagacacgaacaaatgtttgactcacctcaaggaccaaatttcaatggaccacat
ggccctggaaaccagagcttttccaatccccttaacagagcttctggacactattttgat
gagaagaatcttcagagttctcaatttggaaactttggcaatttacctgctccaataaca
gtaggaaatattcaggcatctcaacaggttctgactggtgtttctcagccagtagcattt
ggccaaggacagcaatttttgccagttcatccacaaaatcctggagcatttgttcaaaat
ccttcaggagccctgcctaaggcttatcctgataatcatctcagtcaggtggacgtaaat
gaattattttcaaaactgctaaaaacaggaattctcaaattgtcccagcctgattcagct
acaacacaagtaaatgaagttgctgctccgccccctgctgaggaggaggaagatcaaaat
gaagatcaagacgttccagatcttaccaattttacagttgaagaattaaaacaacgctat
gatagtgttataaatcgactgtacactggtattcagtgttattcctgtggaatgaggttt
acaacatcacagacagatgtatacgcagatcacttggactggcattatcgacaaaataga
actgaaaaagatgtaagcagaaaagtcactcataggcgttggtactacagtttaacagac
tggatagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagttttttgaa
aaggtacatgaagaagttgtactcaaaactcaggaggctgctaaagaaaaggagttccag
agtgtaccggctggaccagcaggagcagtcgagagttgtgaaatctgtcaagagcaattt
gaacagtactgggatgaagaggaggaggaatggcatttaaaaaatgctattagagtagat
ggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgt
acaccatctcccagcaagacaccagttgaaaatcccttgaacattatgttgaacattgtc
aaaaacgaattgcaggaaccctctgaaagtcccaaagttaaggaagaacgaattgatact
ccaccagcttgcacagaggaaagcatagcaacagccactgaaattaaaacagaaaatgat
acagtcgagtcagtttaa
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integrated database retrieval system
