KEGG   PATHWAY: btd00020
Entry
btd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia thailandensis MSMB121
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btd00020  Citrate cycle (TCA cycle)
btd00020

Module
btd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btd00020]
btd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btd00020]
btd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btd00020]
btd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btd00020]
btd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btd00020]
Other DBs
GO: 0006099
Organism
Burkholderia thailandensis MSMB121 [GN:btd]
Gene
BTI_4226  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BTI_2932  merR regulatory family protein [KO:K01647] [EC:2.3.3.1]
BTI_4237  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BTI_2921  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BTI_2307  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BTI_2306  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BTI_2305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTI_4845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTI_1337  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTI_3040  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BTI_3041  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BTI_5343  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
BTI_4229  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BTI_4228  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BTI_4231  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BTI_4230  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BTI_4350  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
BTI_1156  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BTI_4233  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTI_2507  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
BTI_1334  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BTI_4222  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BTI_1704  acoC; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
BTI_1336  2-oxoacid dehydrogenases acyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btd00010  Glycolysis / Gluconeogenesis
btd00053  Ascorbate and aldarate metabolism
btd00061  Fatty acid biosynthesis
btd00071  Fatty acid degradation
btd00190  Oxidative phosphorylation
btd00220  Arginine biosynthesis
btd00250  Alanine, aspartate and glutamate metabolism
btd00280  Valine, leucine and isoleucine degradation
btd00350  Tyrosine metabolism
btd00470  D-Amino acid metabolism
btd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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