Bathymodiolus thermophilus thioautotrophic gill symbiont: MS2017_2181
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Entry
MS2017_2181 CDS
T07716
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bthg
Bathymodiolus thermophilus thioautotrophic gill symbiont
Pathway
bthg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bthg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MS2017_2181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bthg03400
]
MS2017_2181
Enzymes [BR:
bthg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MS2017_2181
DNA repair and recombination proteins [BR:
bthg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MS2017_2181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AYQ57831
UniProt:
A0A3G3IPT9
LinkDB
All DBs
Position
complement(2825729..2829166)
Genome browser
AA seq
1145 aa
AA seq
DB search
MQYLYPQGVIPFESGQKFYWGSLYGSAQALALIEFAKTQDQVVLVVANDITHFEQLFKSL
NFYGSELEILRFDNWEVLPFDHFSPHPDITSSRLNTLSKLSNLKHGIVITTLESLSQKLC
PIAFSKQYSFNLKNGDGLEIQTFSQRLLKIGYNRVTTVREHGEFSVKGSLIDLFPMGANS
PYRIDLFDQEIESMRIFDASTQRSIEEVEQVFLLPAREFATDQESIEIFKSNYLKTFGDS
NGFIFDEVSESRLPSGIEFYLSLFFTHTSTLFDYLPSDTIVATSQGFGALLESSYDEIDA
RHQQASNNLDRLPLPIHQVFLEKDQLFGQIKQRQQLIIGSSKLAEKAGRLNFISKLLPPL
TINAQNKNPLDKFLAFEKKFNGKILIVCESEGRQSVLSDLLINHKHNPHPVAHWQDFLSS
GQSLCITNDELTEGLLTENIAIITEVDLFGADVVKQQRRRRAKHKDFDEAIKSLVEIQIG
DPIVHESYGVGRYLGLKTQTFDGLAQDFLMLEYANHSKLMVPMTSLNLISRYSGASPDIA
PLHKLGTNQWSKAKQKAHEALHDIAADLLEIYAKRESQSGFAFPEPNDAYSSFVASFPFE
ETPDQLKTMGEVLADMQSQKPMDRLVCGDVGFGKTEIAMRAAFLAVEAGKQVAILVPTTL
LANQHYTSFKDRFIKYPIEIAALSRFQSAKEQTHIKQQLLEGRVDIVIGTHKLIHGSIKY
KNLGLIVIDEEHRFGVKQKESLKKMRGESDILTMTATPIPRTLNMALGSLRELSIIATPP
QGRSAIQTFVNEWDNNTIKEACSRELHRGGQIFVLHNDIDSIDNMAETLKSIIPNARVRI
AHGQMPTRELEQIMSDFYHGRFQILVCTTIIETGIDIPNANTIIINNAQNFGLAQLHQLR
GRVGRSHHRAYAYLVIKSHQSLSKNAKKRLEAVESLEELGAGFMLANHDLEIRGAGDLLG
DNQSGKISEIGFNLYHDLLKRTIDAMRAGKKINANDPINPEIEIDTGIPCIIPDTYLGDV
HERLVLYKRISNAKNNDELKDLQIEMIDRFGLLPDATKNLFSVTQLKLFSEKIGIDKISI
YDDKAHLTFSNKTTIEPIKIINLVQTQPRNYQIKGQNQLILKHQMPEDGARIEWVENQLK
ELHSK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgcaatatctttatccacaaggtgtaattcctttcgaatctgggcaaaaattttattgg
gggtcgctttacggtagtgcgcaggccttggcgttgattgaatttgccaaaacacaagat
caggttgtgctggtggtggcgaatgatattacccattttgagcaattatttaaatccctc
aatttttatggcagtgagttggagattttgaggtttgacaattgggaagtgttgcccttt
gatcatttctctccacacccagatatcacttctagccgccttaatactttgtctaaattg
tctaatcttaagcatggcattgttattaccactttagaatcgttgtcacaaaaattatgc
ccaatagcgtttagcaagcaatacagttttaatttgaaaaatggcgacggtttagagata
caaactttttctcagcgtttgttaaaaattggctataaccgagtgacaacggttcgagag
catggtgaatttagcgtgaaaggctcacttattgacctttttccaatgggtgctaattcg
ccctatcgcatagatttatttgaccaagaaattgaatctatgcgtatttttgacgcttca
acgcaacgctccattgaagaagttgaacaagtgtttttgttaccagcaagagagtttgcc
actgaccaagaaagtattgaaattttcaaaagcaattatcttaaaacttttggcgatagc
aacggctttatttttgatgaagttagtgaatcccggttgccgagtggtattgaattttat
ctttcattattttttacccacaccagcaccttgtttgactatttgccaagcgataccatt
gttgccaccagtcaaggctttggtgcgcttttggaatcaagttatgatgaaattgatgcg
cgtcatcagcaagcaagcaataatcttgatagactgcctttgcccattcatcaagttttt
cttgaaaaagatcagttgtttggtcaaattaaacaacgacaacaacttattattggcagt
tccaaacttgctgaaaaagcaggcagattgaattttatcagcaagttattgccgccgctg
accatcaatgcgcagaataagaatccattggataagttccttgcttttgaaaagaaattt
aatggcaaaatccttattgtttgtgagtctgaagggcgacaaagtgtattgagcgatttg
cttattaatcacaagcacaatccacatcctgttgcccattggcaagattttcttagcagt
ggccaaagtctttgcattaccaatgatgaacttaccgaagggctgctaacagagaatatt
gccattatcaccgaagtggatttgttcggtgcagatgtggttaagcaacagcgacgcagg
cgtgccaaacataaggattttgacgaggcgattaagtccttggtggaaattcaaattggc
gacccgattgtgcatgaaagttatggcgtcgggcgttatttggggctaaaaacgcaaacc
tttgatggtttggcacaggatttcttaatgctagaatacgccaaccattcaaaattgatg
gtgccaatgacttcgctcaacctaatttctcgttattcaggcgcatctcccgatattgca
ccattgcataaacttggtaccaatcagtggagcaaggctaagcaaaaggcgcatgaggcc
ctgcacgacattgctgccgatttgttagaaatctatgccaagcgtgaatcgcaaagtggt
tttgcttttcctgaaccgaacgacgcttattcctcctttgtggccagttttccttttgaa
gaaacgccagaccaacttaaaaccatgggcgaagtgttggcagatatgcaatctcaaaaa
ccaatggacagactggtttgtggtgatgttggttttggtaaaactgagattgccatgcgt
gctgcatttttggcagtagaagcgggcaaacaagtggctattttggtgccaacaacttta
ttggcaaaccagcattacacctcttttaaagacagatttatcaaatatccaattgaaatt
gccgctttgtcacgctttcaaagcgccaaggaacaaacacacattaaacaacaattgctt
gaaggcagagtggatattgtgattggtacgcacaagcttattcatggcagtattaaatac
aaaaatcttggattgattgtgattgatgaagagcatcgatttggggttaaacaaaaagaa
tcgttgaaaaaaatgcgaggcgaaagcgacattctgaccatgacagcaacgccaattccc
cgcacgctgaatatggcactcggctcactcagagaattgtctattattgccacgccacca
caaggacgaagcgccattcaaacctttgtgaacgagtgggataacaacaccattaaagag
gcgtgctctcgagagttgcatcgaggtgggcaaatatttgtactgcataatgacattgat
tcaattgacaatatggcagaaacccttaaatcaattataccaaatgcacgcgtacgcatc
gctcatgggcaaatgccaacgcgtgaattagagcaaattatgagcgatttttaccatggt
cgctttcaaatccttgtctgcaccactatcattgaaacaggcatcgatattcccaatgcc
aatactattattatcaacaatgcacaaaattttggactggcacaattgcaccaactgcgt
ggacgagtcgggcgttcgcaccacagagcctacgcttatttagtgattaaatcacatcaa
tcattgagcaaaaacgccaaaaaacgcctagaagcggttgaatctttagaagaacttggc
gctggatttatgctggccaatcacgatttagagattcggggtgcaggtgatttgctgggt
gacaatcaatctggaaaaatcagcgaaatcggctttaacctctatcatgatttactcaaa
cgcacaattgatgccatgcgtgcaggcaaaaaaattaatgcaaacgacccaattaaccct
gaaatcgaaattgacaccggcatcccctgcatcattcccgacacctatcttggcgatgta
cacgaacgcctcgttctgtataagcgcatttctaacgctaaaaataacgacgaattgaaa
gatctacaaatagaaatgattgaccgctttggcctactcccagatgccactaaaaaccta
ttctcggtaacccaattaaaacttttctcggaaaaaattggcattgataaaatttcaatc
tatgacgacaaagcacacctcaccttctccaataaaaccacaattgagccaataaaaatc
atcaatctagtgcaaacccaacctagaaactaccaaatcaaaggacaaaatcaacttatc
ctcaagcatcaaatgcccgaggacggtgcacgcattgaatgggttgaaaatcaactcaaa
gaattacattcaaaataa
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