Bifidobacterium thermophilum: D805_0818
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Entry
D805_0818 CDS
T02505
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btp
Bifidobacterium thermophilum
Pathway
btp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D805_0818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btp03400
]
D805_0818
Enzymes [BR:
btp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D805_0818
DNA repair and recombination proteins [BR:
btp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D805_0818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AroM
SLFN-g3_helicase
MINT_RAM7
Motif
Other DBs
NCBI-ProteinID:
AGH41085
UniProt:
M4RC98
LinkDB
All DBs
Position
1022558..1026130
Genome browser
AA seq
1190 aa
AA seq
DB search
MAGEQHTPAAPSVAPTAGALSGLLDQLDHDRSFHDLSHGLVDVPANEGSEPMLNVEAVPG
IRPALAAATAQRAPVVAIVPSGRESQEAVEAIRSWYDGDPQDIAELEAWETLPHERLSPR
ADTVASRMAVFRRLTHPEPGNALFGPIKVLVMPVRSLIQPVVAGLGDVEPLVFAAGEELP
LDQAAARLVENAYTRVDLVMDRGQFAVRGGILDVFPPTIAHPVRIEFFGDEIDTIKEFHA
SDQRTYGDGLHTVWATPCRELQLTQAVRDRAKSLIGQIPNAEDMLASIADGIPVEGMESL
MPALIDNMEPVQRMLPQGAVIMLSDPERLRRAADDLTKTANEFLAASWHVAASGHGAGAP
ISFDQASFLDYEETVSSLAYSRDEVWKLADFGVDPGLPGNVRIGASSPQEYRGDESKAAT
GIEGLIDAGFVVTITAGAQGTLARLKRAVNETGITRFDVLRSRAVDGFVDRDARIALLTE
RDLTGRSSAVGQTKTPKRRRKAIDLMELKPGDYVVHEQHGIGRYTGMQQRQIGPAGAKTT
REYLVVEYAPSKRNAPADKLYIPTDQLDQVSKYIGSDAPKLNKLGGSDWAQTKAKARKHV
HEIAQDLVRLYSARQRTKGFAFSPDTPWQKELEDAFPYQETPDQLTTIDEVKADMEKPVP
MDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHYETFTERYSGFPVDVA
AMSRFQSPKEIKQTIKGLEDGSVDVVIGTHKLLNPKIKFKDLGLLIIDEEQRFGVEHKET
LKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGPYEDAQVTAA
IRRELLRGGQVFYVHNRVDSISATADKIHQLVPEAKIGVAHGKMGEKQLDAIIRDFWHRD
IDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKP
MTQQSHDRLATIAQNTSLGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSQ
AVEEYKEPERKESVAVSIDLPIEASIPVDYIDSDKLRLEAYRKLASARSEQDLDDVRDEL
TDRYGKPPVELDSLFAVARLRNKARDLGITEIIAQGRNVRIRGIEPAESLMMRLQRIYPG
AQYRPLTRTLTIPAPFAGSLGSGPMPGDQVIAWTNQLLDDLQWKPRTAGK
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgagcagcatacgcccgcggctccgtctgttgcaccgactgccggagcgctt
tccggactgctcgaccagctcgatcacgaccggtccttccatgatttgtcgcacggactg
gtcgacgtgcctgcgaatgagggcagcgagccgatgctcaatgtggaagccgtgcccggc
attcgaccggctctcgcagcggcgaccgcacagcgagccccagtcgttgccatcgtgcct
tcgggacgggaatcgcaggaagccgttgaggcgattcgcagctggtatgacggcgatccg
caggatatcgcggaacttgaggcctgggagacgctgccgcatgaacggctctccccgcgt
gcagacacggtcgcgtcccgcatggcggtattccgtcgtttgacgcatccggaacccggg
aacgccctgtttggaccgattaaggttctggtcatgccggtgcgttcgctcatccagccg
gtcgtcgccgggttgggtgatgtcgaaccgttggtttttgcggcgggggaggagcttccg
ctcgaccaggccgcggcccgtcttgtcgagaacgcctacacccgcgtcgatctggtcatg
gaccgcggacagttcgcggtgcgcggcggcatcctcgacgtgttcccgccgaccatcgct
catccggtccgcatcgaattcttcggcgatgaaatcgacaccatcaaggagttccacgcc
tccgaccagcgcacctacggcgatggcctacacaccgtctgggcgacgccatgccgcgag
ctgcagctgacgcaagcggtgcgtgaccgcgcgaaatcgctcatcgggcagattcccaac
gccgaggacatgctcgcctccatcgcggacggcatccccgtggaaggcatggaatccctg
atgcctgcgctgatcgacaacatggagccggtgcagcgcatgctgccccaaggtgcggtc
atcatgctctccgacccggaacggttgcgccgggcagcggacgacctgacgaaaacagcc
aacgaattcctcgccgccagctggcatgtcgccgccagcggccatggggcaggcgcgccg
atcagcttcgaccaggcgagtttcctcgactacgaggagaccgtcagctcgctcgcctat
tcgcgcgatgaggtgtggaaactcgctgatttcggcgtggacccaggcctgccgggcaat
gtgcgcatcggcgcaagctccccgcaagaataccgtggcgacgagtcgaaagccgccacc
ggtattgaagggctgattgacgccggattcgtcgtgaccatcaccgccggagcccaagga
acgctcgccagactcaaacgagctgtcaacgagaccggcatcacgcgctttgacgtattg
cgttcgcgagccgtcgacgggttcgtggaccgggacgcgcgaattgccttgctcaccgaa
cgcgacctgaccggccgttccagcgccgtcgggcaaaccaagacaccgaagcgccggcgc
aaggccatcgacctgatggagctcaaacccggcgattacgtggttcatgagcagcatggc
atcgggcgatacaccggcatgcagcagcgccaaatcggccctgccggcgcgaaaacgacg
agggaatacctggttgtcgaatacgcgcccagtaaacgcaacgcccccgccgacaagctg
tacattcccaccgaccagctcgaccaggtcagcaaatacatcggctcggacgcccccaaa
ctcaacaaactcggcggctccgactgggcgcagaccaaggcgaaagcccgcaagcatgtg
cacgagatcgcccaggacctcgtacgcctgtattcggcccgccaacgcaccaaaggcttc
gcgttcagcccggacaccccgtggcaaaaggaactcgaggacgccttcccgtaccaggag
actcccgaccagctgaccaccatcgacgaggtcaaggccgatatggagaaaccggtgccg
atggaccgcctgatctgcggcgatgtcggcttcggcaagactgagattgcggtacgagcc
gccttcaaagccatacaagacggcaagcaggtggccgtcctcgtaccgaccacgctgctc
gtgcaacagcattacgagacgttcacggaacgttactcgggcttcccggtggatgtcgcc
gcgatgagccgcttccaaagccccaaggaaatcaagcagaccatcaaaggtctggaagac
gggtcggtcgatgtcgtcatcggcacgcacaagctgctcaacccgaaaatcaagttcaag
gatctcgggttgttgatcatcgacgaggagcagcggttcggcgtcgagcataaggaaacg
ctcaaagcgctgcgcacgaacgtcgacgtcctgtccctgtcggcgacgccgattccacgc
accttggaaatggcggtgaccggcatccgcgagatgtccacgctcgccaccccgcccgag
gaccgtctgcccgtgctcacgtatgtcggcccatacgaggacgcgcaggtcacggcggcc
atcaggcgcgagctgttgcgcggcggccaggtgttctacgtgcataaccgcgtcgattcc
atcagtgccacggcagacaagatccaccagctggtgcccgaggcgaaaatcggcgtcgcg
cacggcaagatgggagagaaacaactcgacgcaatcatccgcgatttctggcatcgcgat
atcgacgtgctcgtatgcacgacgatcatcgaaaccgggctggatatttcgaacgcgaac
acgctgatcgttgaccatgccgaccgtttcggcttaagccagctgcaccagttgcgcggc
cgcgtcggccgaggacgtgaacgcgcctacgcgtacttcctgtacgacccgtccaagccg
atgacccaacagtcccatgaccggctcgcgaccatcgcgcagaacacatcactggggtcg
ggattcgacgtggcgatgaaagatcttgagctgcgtggcaccggcaacctgttgggcgac
gagcagagcggacatatcgaaggggtcggtttcgacctgtacgtgcgcatggtttcgcag
gccgtcgaagagtacaaggagcctgagcgcaaggaatcggtagccgtcagcatcgatttg
ccgatcgaggcgtcgattccggtggattacatcgattccgacaagctgcggcttgaggcg
tatcgcaagcttgcctcggcgaggagcgaacaggatctcgacgatgtgcgagacgagctg
accgaccgctacggcaagcctccagtagagctggattcgctgttcgccgtggccagactg
cgaaacaaagcgcgagatcttggtatcaccgaaatcatcgctcaggggcggaacgtgcgt
attcgtgggattgagccggcagaatccctgatgatgcgattgcaacgcatctacccggga
gcccagtaccggccgctcacccgcacgttgacgattccggcgccgttcgctggctcgctt
ggctcgggccccatgcccggcgaccaagtgattgcctggaccaaccagctgctcgacgac
ctgcaatggaagccccggacggccggcaagtga
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