Bibersteinia trehalosi USDA-ARS-USMARC-189: F543_10960
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Entry
F543_10960 CDS
T03018
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
btrh
Bibersteinia trehalosi USDA-ARS-USMARC-189
Pathway
btrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F543_10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btrh03019
]
F543_10960
Enzymes [BR:
btrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F543_10960
Messenger RNA biogenesis [BR:
btrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F543_10960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHG83960
LinkDB
All DBs
Position
complement(1072585..1073409)
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AA seq
274 aa
AA seq
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MVGTTGRVIDYVKQGVINLNAIQVIVLDEADRMFDLGFIKDIRYLMRKCPEPAQRLTMLF
SATLSPRVRELAYEDMHNAEYVEIEPQQRTGHRIQEELFYPSNEDKMALLLTLMEEEWPE
RCIVFANTKHKCEEVWQYLLADGHRVGILTGDIAQKKRLALLESFTRGELDILVATDVAA
RGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGKSISFACERYAVNLPAIEAYIGH
AIPVSQYDSEALFPLPKVKAKNRTRRLPINNRKR
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
ttggttggcacgactgggcgtgtaattgattatgtcaaacaaggggtaataaatctaaac
gcaatacaagtgattgtattagatgaggcagatcgaatgtttgatcttggttttatcaaa
gatattcgttatttaatgcgtaaatgccctgaaccggctcaacgcttaacaatgctgttt
tcagcaacactttctccccgagtacgtgagcttgcctatgaagacatgcataacgctgaa
tatgttgaaattgagcctcaacaacgcacaggacaccgtattcaggaagaactcttctat
ccttctaacgaagataaaatggcattattactcaccttaatggaagaagaatggcctgaa
cgttgcattgtgttcgccaacaccaaacacaaatgtgaagaagtatggcaatatttactc
gcagatgggcatcgtgttggcattttaactggcgatattgcacaaaagaaacgtcttgct
ttactcgaaagtttcacccgtggcgaattagatattctagtggcaaccgacgtggcggct
cgtggtctgcatattcctgatgttactcacgtgttcaattacgatctcccagatgatcgt
gaagattatgttcaccgtattggtcgcacaggacgagctggcgaaagtggcaaatccata
agctttgcttgtgaacgctatgctgttaatttgcctgcaattgaagcctacattggacat
gcaattccagttagccagtatgatagtgaagccttattcccgttacccaaagtgaaggct
aaaaacagaacacgtcgcttaccaatcaataaccgtaaacgctaa
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