Bibersteinia trehalosi USDA-ARS-USMARC-189: F543_560
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Entry
F543_560 CDS
T03018
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
btrh
Bibersteinia trehalosi USDA-ARS-USMARC-189
Pathway
btrh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
btrh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F543_560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
btrh03021
]
F543_560
03400 DNA repair and recombination proteins [BR:
btrh03400
]
F543_560
Enzymes [BR:
btrh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F543_560
Transcription machinery [BR:
btrh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F543_560
DNA repair and recombination proteins [BR:
btrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F543_560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AHG82920
LinkDB
All DBs
Position
56116..60393
Genome browser
AA seq
1425 aa
AA seq
DB search
MKDLVKFLKAQSKSSDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVIEPGMTDLEKNQLLTEEQYWEAEERWGDEFEAK
MGAEGIQALLKDLDLEHQCEVLREELQETNSETKRKKITKRLKLLEAFMQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKKMVEREDPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTRDKVNGKGEGMYFLDPREAEKAYRT
GQAELHARVKVRITEYEKNEAGEFEAKTSLVETTIGRAILWMIAPKGMPYSLFNQTLGKK
AISKLINESYRRLGLKESVVFADQIMYTGFAYAARSGSSVGIDDMVIPEQKYSIIEAAEA
EVAEIQEQFNAGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTEEGIVMTPHIEGGDEKVPLRELV
LGRVVAEDVLKPGSDEVLIARNTLIDEKLCDVIDQNSVDSIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNAGTIK
LANAKFVTNKDGKIVLTSRNTELTVIDSFGRTKENYKVPYGAVLSKNDGAEVTAGEVVAN
WDPHTMPIISEVSGFIKFADIVDGLTVTRQTDELTGLSSIVVQDAGERPTAGKDLRPALK
LVDAQGNDILHNDTPVQYILPGKAIVSLNEGAEVSVGEALARIPQESTGTKDITGGLPRV
ADLFEARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAHEEMIPKWRQLNVFEGE
MVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQMLR
KAIITNAYDSEFLEGEQVEVARVKIVNRKREAEGKPLVEFERELLGITKASLATESFISA
ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHKERAKRRAAGEEFSLN
IEAATPVSSFASAEDIEAETQSFVADDATSSLAALLNAGMDEVEE
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacaatctaaatcaagcgatgattttgatgtg
attaaaatcggtttagcatcaccagacaagatccgttcttggtcattcggtgaagtgaaa
aaaccagaaaccatcaactaccgtacttttaaaccagagcgtgatggtctgttctgtgcg
cgtatctttgggccggtaaaagattacgaatgtttgtgtggtaaatacaaacgtttaaaa
caccgtggtgtaatctgtgaaaaatgtggcgttgaagtaacgcaaactaaagttcgccgt
gatcgtatgggtcacatcgaattagcgtgtcctgttgcgcacatctggttcttaaaatca
ttaccgtcccgtatcggtttgattttagatatgccattgcgtgatattgagcgtgtgctt
tattttgaaagctatgtggttatcgagccgggtatgactgatctcgagaaaaaccaactt
ttaaccgaagaacaatactgggaagcggaagagcgttggggtgatgagtttgaagcaaaa
atgggtgcagaaggtatccaggcattgttgaaagacttagatttagagcatcaatgtgaa
gtattgcgtgaagagttacaagaaactaactctgaaaccaaacgtaaaaaaatcactaaa
cgtttgaaattattagaagcattcatgcaatctggtaacaaaccagaatggatggtaatg
actgtattacctgtgcttccaccagatttacgtccattagtaccacttgatggtggtcgt
tttgcgacttcagatctgaacgatttatatcgccgtgtaatcaaccgtaacaatcgttta
aaacgcttattagacttagttgcaccagacattatcgtgcgtaacgaaaaacgtatgttg
caagaatctgttgatgcgttattagataacggtcgtcgtggtcgtgcgattacaggttca
aacaaacgtccgttaaaatctttggcagatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttgctcggtaaacgtgtggactactcaggccgttcggtaatcaccgtaggtcca
tacttacgcctacaccaatgtggtttaccgaaaaaaatggcgttggaattattccgtccg
tttatttactctaaattagagagccgtggtattgcatcaaccatcaaagcggcgaagaaa
atggtagagcgtgaagatccaatcgtatgggatattcttgctgaagtgattcgtgaacac
cctattctgcttaaccgtgcaccaactcttcaccgtttgggtatccaagcgtttgaaccg
ttgttaattgaaggtaaagcaattcagttacacccacttgtgtgtgcggcgtttaacgcg
gacttcgatggtgaccaaatggcggtacacgttccattaacccttgaagcgcaattagaa
gcgcgcgcgttaatgatgtccactaacaacgtactttcacctgcgaacggtgatccgatt
atcgttccatctcaggacgttgtattaggtctttactatatgacccgtgacaaagtgaac
ggtaaaggtgaagggatgtatttccttgacccacgtgaagcggaaaaagcatatcgtact
ggtcaagcggaattacacgcccgtgttaaagtgcgcatcactgaatatgagaagaatgaa
gctggtgaatttgaagcaaaaacttcattagtggaaacgactattggtcgtgctatttta
tggatgatcgcaccaaaaggtatgccatattcactgtttaaccaaactttaggtaaaaaa
gcgatctcgaaactgatcaacgaaagctatcgccgtttaggtttgaaagagtcagttgtt
tttgcagaccaaattatgtacaccggttttgcttatgcagcccgttctggttcatcggta
ggtattgatgatatggtgatcccagagcaaaaatactcaattatcgaagcagcagaagca
gaagttgctgaaattcaagaacagtttaacgcaggtcttgtaaccgcaggtgagcgttat
aacaaagtgatcgatatttgggcggctgcgaacgaacgtgtagcaaaagcgatgatggaa
aacctttcaacggaagaagtaatcaaccgtgaaggtaaccctgaaaaacaagcctcattt
aacagcatctttatgatggcagattctggtgcgcgtggttctgcggcacagattcgtcag
cttgctggtatgcgtggtttgatggcacgtccagatggttcgattatcgaaacgccaatc
accgcgaacttccgtgaaggcttaaacgtattacagtactttatttcaacccatggtgcg
cgtaaaggtcttgcggataccgcattaaaaacagcgaactctggttacttaactcgtcgt
ctagtggatgtagcacaagacttggtaatcgttgaagacgactgtggcaccgaggaaggt
atcgtcatgacaccacatattgaaggtggcgatgagaaagtaccattacgtgagcttgta
ttaggtcgtgtggttgcagaagatgtattaaaaccgggttcagacgaagttttaattgca
cgtaatacactaatcgatgaaaaattgtgtgatgtgatcgaccaaaactctgtcgatagc
atcaaagtacgctcagtagtaacctgtaacacagactttggtgtgtgtgcgaaatgttac
ggtcgtgacttagctcgtggtcacttgattaaccaaggtgaagcggttggtgttatcgca
gcacaatctatcggtgaaccgggtacacagctaacgatgcgtacgttccacatcggtggt
gcggcatctgcagcagctaaagaatctagcgttcaagtgaaaaatgcgggtacaattaaa
ttagccaatgcgaaatttgtaactaacaaagatggcaagattgtgcttacttcacgtaat
actgaattaaccgtgatcgacagctttggtcgtaccaaagagaactataaagtgccttac
ggtgctgtattaagcaaaaacgatggtgcagaagttaccgctggtgaagtggtcgcaaac
tgggatccacataccatgccgatcatctcggaagtatctggtttcatcaaatttgcagac
atcgtggacggcttaactgttactcgtcaaaccgatgaattaacaggtttatcttctatc
gtggtacaagatgcgggtgagcgtccaaccgcaggtaaagatttacgtccagcgttaaaa
ttagtggatgcacaaggtaatgacattctgcacaacgatactccagtacaatatatcctt
ccgggtaaagcgattgtaagcttgaacgaaggtgcggaagtgtctgtgggtgaagcgtta
gcacgtattccacaagaaagtacaggtacgaaagatattaccggtggtcttccacgcgtt
gcagacttattcgaagctcgcaaaccgaaagagccagccatcttggcggaaatctcaggt
atcgtatcatttggtaaagaaaccaaaggaaaacgccgcttagtgattaccccagcagaa
ggcgaagcacatgaagagatgattccaaaatggcgtcagctcaacgtatttgaaggtgag
atggttcaacgtggtgatgtgatctctgatggtgcagagacaccacatgacatcttacgt
ttacgtggcgttcacgctgtaactgactacatcgtaaacgaagtgcaagaagtttaccgc
ttacaaggggtaaaaattaacgacaagcacatcgaagtgatcgtccgtcaaatgttgcgt
aaagcgatcatcactaatgcttacgactctgagttcctcgaaggcgaacaagttgaagtt
gcacgagtgaaaatcgttaaccgcaaacgcgaagcggaaggcaaaccgctggtagaattt
gaacgtgaactacttggtattaccaaagcatcacttgcaacagaaagctttatttctgcg
gcatcgttccaagagactactcgcgtgcttaccgaagcagcagttgcaggtaaacgtgat
gaattgcgtggcttaaaagagaacgttatcgttggtcgcttaatcccagcaggtacaggt
tttgcctaccacaaggaacgtgcaaaacgccgtgcagcgggtgaagagttcagcttgaat
atcgaagcagcgacgccagtttcttcttttgcaagtgcagaagacattgaagcggaaact
caaagctttgtcgctgatgatgcaactagcagcctcgccgcattgttaaatgcaggtatg
gatgaagtagaagagtag
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integrated database retrieval system
