Bordetella trematum: SAMEA390648702503
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Entry
SAMEA390648702503 CDS
T04322
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btrm
Bordetella trematum
Pathway
btrm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA390648702503 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btrm03400
]
SAMEA390648702503 (mfd)
Enzymes [BR:
btrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA390648702503 (mfd)
DNA repair and recombination proteins [BR:
btrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMEA390648702503 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SAI70828
UniProt:
A0A157N7U5
LinkDB
All DBs
Position
1:complement(2632956..2636417)
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AA seq
1153 aa
AA seq
DB search
MPDSPTSFAVETQLPSSSALLAALKPGTRYVQPCPPGSGDGWLLADLARQAARPLVVLTA
DPLQAQRLADEIPLFAPGLRVRQLPDWETLPYDAFSPHQDLISQRLYTLHALMTQSVDIL
TLPVTTALYRLAPPAFLAAYTFAFKRGDRLDEAALRAQLTLANYNHVTQVTAPGEFCLRG
GLIDLFPMGSAVPYRLDLFDDEIESIRAFDVDTQRSLYPVNEVQLLPGREFPMDEAARNH
FRARFREVFEGDPSRALPYKDIGNGIAFAGVEYYLPLFFDQTATLFDYLSAGTLTVTLGN
IEEAIQRFSLDTASRYHFLKSDRERPVLPPQALFLDRDALYAGFKDFARLALSGEGPHPD
FCAAPDVAVMRRAEDPVARLRALVSKPDAEVLLCADSAGRRETLSQMLAEQGLAPDCQTD
TIGDFLQTPARFGLAVAPLAAGFGLQGGPVFLTENDLYPGNAGVRRRGKRSQEGASNVEA
MVRDLAELREGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLQYASGATLYVPVSQLHVI
ARYSGADPEAAPLHQLGSGQWDKARRKAAKQVRDTAAELLALYAQRAARQGYSFELPLSD
YESFAEGFGFEETPDQSAAIQAVIMDMTSGKPMDRLVCGDVGFGKTEVALRAAFLAVANG
KQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEIAAAVEGINDGRVDIVIG
THKILSKDVQFKRLGLVIIDEEHRFGVRQKETLKSLRAEVDVLTLTATPIPRTLGMSLEG
IRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQAYFLHNEVETIHNRRARL
EELVPEARICVAHGQMPERELEQVMKDFYQQRYNVLLCTTIIETGIDVPTANTIVIHRAD
RFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGAGFYLAMHD
LEIRGTGEILGDSQSGNIQEVGFSMYNEMLNEAVRALKVGEEPDLDAPFNLACEVNLHAP
ALLPADYCPDVHARLAIYKRLSHADGEDDLIRIQEELIDRFGKLPEPAQTLLMTHRLRLI
AEPLGIVKIDVSEHQALLQFGPKANVDPLRIIELVQRQRHIKLSGQDRLRIEITAPQLSG
RADAVRAVLRSLK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcctgactcaccgacctctttcgcagtggaaacgcaactgccttcctcctccgccctc
ctcgccgcgctcaagccgggcacgcgctatgttcaaccctgtccgccgggatccggcgac
ggctggctgctggccgacctggcgcgccaggcggcccgaccgctggttgtgctgacggcc
gatcccttgcaggcccagcgcctggccgacgagatcccgctgttcgcgcccggcctgcgg
gtgcgccagctgcctgactgggagacgctgccctacgacgcgttctcaccccatcaggac
ctgatctcacagcgcctgtacacgctgcatgcgctgatgacccaatcggtcgacatcctc
acgctgcccgtcaccacggcgctgtaccggctggcgccgcccgctttcctggcggcctac
acctttgccttcaagcgcggcgaccgtctggacgaagccgccttgcgcgcccagttgacc
ctggccaactacaaccacgtcacccaggtgaccgcgccgggcgaattctgcctgcgcggc
gggctgatcgacctgtttccgatgggctcggcggtcccctaccggctcgacctgttcgat
gacgagatcgaatccatccgcgccttcgacgtcgacacccagcgcagcctgtatccggtc
aacgaggtgcaattgctgcccggccgggaattcccgatggatgaggcggcgcgcaaccat
tttcgcgcacgctttcgcgaagtcttcgagggcgacccctcgcgcgcgctcccttacaag
gacatcggcaacggcatcgcctttgccggggtggaatactacctgccgctgttctttgac
cagaccgccacgcttttcgactacctcagcgccggcaccctgacggtcacgctgggcaat
atcgaagaggccatccagcgcttttcgctggacacggcaagccgctaccactttctcaaa
agcgaccgggaacggccggtgctgccgccgcaggcccttttcctggatcgcgacgcgctt
tacgccggcttcaaggacttcgcccgcctggccctgagcggcgaaggaccgcaccccgat
ttttgcgcagcgcccgatgtcgcggtgatgcggcgcgccgaagatccggtggcgcgcctg
cgcgcgctcgtcagcaaacccgatgccgaggtgctgctgtgcgccgactcggccgggcgg
cgcgagacgctcagccagatgctggccgagcagggcttggcgcctgactgccagaccgac
accattggcgacttcctgcagacgccggcgcgcttcgggctggcggtggcgccgctggcc
gcgggcttcggcctgcagggggggcccgtctttctcaccgaaaatgatctgtacccgggc
aatgccggcgtgcgccgccgcggcaaacgcagccaggaaggcgccagcaacgtcgaggcc
atggtgcgtgacctggccgagctgcgcgaaggcgacccggtcgtacatgcccagcacggc
atcggccgctatcacggcctggtcaacatggacatgggcgaaggcgagatggagtttctg
cacctgcagtacgccagcggcgccacgctgtatgttccggtttcgcagttgcacgtcatc
gcgcgctacagcggcgccgacccggaagccgcaccgctgcaccagctgggatccggccag
tgggacaaggcgcgccgcaaggcggccaagcaggtacgcgataccgcggccgaattgctg
gctttgtacgcccagcgcgcagcccgtcagggctacagcttcgagctgccgctgtcggat
tatgagtccttcgccgaaggcttcggtttcgaggaaacgcccgaccaatcggccgcgatc
caggccgtgatcatggacatgacctccggcaagcccatggaccgcctggtttgcggcgat
gtcggcttcggcaagaccgaagtggccttgcgggcggccttcctggccgttgccaatggc
aagcaggtcgccctgctctgccccaccacgctgcttgccgaacaacacgcccagaccttc
tccgaccgcttcgccgactggcccgtgcgggtggtggagctgtcacgctttcgctcggcc
aaggaaatcgcggccgccgtcgagggcatcaatgacggacgcgtggatatcgtcatcggc
acgcacaagatcctgtccaaggacgtgcagttcaagcgcctggggctggtgatcatcgac
gaagaacaccgtttcggcgtgcgccagaaggaaaccctcaagtcgctgcgcgccgaggtg
gacgtgctgacgctcacggccacgccgattccccgcaccctgggcatgtcgctggaaggc
atccgcgatttctccgtgatcgccaccgcgccccagaagcgcctggccatcaagaccttc
gtacgccgcgaagacggcagcaccatccgcgaggccttgctgcgcgaactcaagcgcggc
ggccaggcctacttcctgcacaacgaagtcgagaccatccacaaccgccgcgcccgcctg
gaggagctggtgcccgaggcgcggatctgcgtggcccacggccagatgcccgaacgcgag
ctggaacaggtcatgaaggacttttaccagcagcgctacaacgtgctgctgtgtaccacc
attatcgagaccggcatcgacgtgcccaccgccaacaccatcgtgatccaccgggccgat
cgcttcggcctggctcagctgcaccagttgcgcggacgtgtgggccgctcgcatcaccag
gcctatgcctatctgctgacgccgggcgaagacgccatcaccagcaatgccaagaagcgc
ctggaagccatccaggccatggaagagctgggcgccggtttctatctggccatgcatgac
ctcgagatccgaggtaccggcgagatcctcggcgactcgcaatcgggcaacatccaggag
gtcggcttctcgatgtacaacgagatgctcaacgaagccgtgcgcgcgctcaaggtgggc
gaggagccggatctggacgcgccgttcaacctcgcctgcgaggtcaatctgcatgcgccc
gccctgctgccggccgactactgccctgacgtccatgcgcgcctggccatctacaaacgc
ctgtcgcacgccgatggcgaggatgacctgattcgcatccaggaagagctcatcgatcgt
ttcggcaagctgcccgagccggcccagaccctgctcatgacgcatcgcctgcgcctgatc
gccgagccgctgggcatcgtcaagatcgacgtcagcgagcaccaggcattgctgcagttc
ggccccaaggccaacgtggatccgctgcgcatcatcgaactggtgcaacgccagcgccac
atcaagctctcgggccaggatcgtctgcgcatcgagatcaccgcgccgcaattgagcggc
cgggccgatgcggtgcgcgccgtgctgcgctcgctaaaatag
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