Burkholderia sp. RPE67: BRPE67_ACDS12400
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Entry
BRPE67_ACDS12400 CDS
T03604
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bue
Burkholderia sp. RPE67
Pathway
bue03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BRPE67_ACDS12400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bue03400
]
BRPE67_ACDS12400
Enzymes [BR:
bue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BRPE67_ACDS12400
DNA repair and recombination proteins [BR:
bue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BRPE67_ACDS12400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BAO86295
LinkDB
All DBs
Position
1:complement(1331145..1334630)
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AA seq
1161 aa
AA seq
DB search
MSTKASTQAVNAQSSAPIALVKAGQRFVFDGASGSSDALAIARYHTAYRERVPLLTVVTA
GAVDAQRLAAEIPYFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDIL
IVPATTALYRMPPASFLAAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRG
SLIDLYPMGSALPYRLDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTA
FRSRWREVFEGDPSRSQIYKDMGNGVPSAGIEYYLPLFFDETATLFHYLPEGSQLVFVGD
MDAAIKRFTHDTKQRFDFLSHDRERPLLEPRRLFLTDDDFFTFAKPFAQLKFPATPEGGW
AVPLPGLAIDRHADEPLLALRHYLEQTDNRVMLVAESAGRRETIQQLLADNHLRGESRDT
FLEWLTADAKFTLGIAPLANGFVLPSEKLAIVTETELYGPLARRAGRRRQEQASNVDSMV
RDLAELKIGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYQNDAKLYVPVAQLHVISR
YSGADPDSAPLHQLGSGQWEKAKRKAAQQIRDTAAELLNLYARRASREGYAFKLEPRDYT
KFAESFGFEETPDQAAAIASVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMAGKQ
VAILSPTTLLAEQHTQTFTDRFADWPVRIAELSRFKTGKEVSTAIQQINEGSIDIVIGTH
KLLSSDVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR
DFSVIATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRTMLEA
LVPEARIAVAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPSANTILMHRADKF
GLAQLHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLE
IRGTGEVLGDKQSGEIQEIGFQLYTDMLNDAVRALKEGREPDLNAPLAATTEINLHAPAI
LPADYCGDVQERLSLYKRLANCESSDAIDGILEELVDRFGKLPPQAHALVETHRLRLAAK
PLGISKIDAAELSISLQFIPNPPVDGMKIIEMVQKHKHIKLAGQDKLRIEARSPDLAVRI
STVKETLRALGGPVRQALAAR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaaagcgtccacccaagccgtcaacgcgcagtccagcgctcccatcgcgctc
gtgaaggcgggtcagcgcttcgtcttcgacggcgcgtccggctcctccgatgcgctcgcc
atcgcgcgctatcacaccgcgtatcgcgagcgcgtgccgctcctgacggtcgtcaccgcg
ggcgccgtcgatgcgcagcgtctcgccgccgagatcccctacttcgcgccggatgcgcgc
gtgcgtcttctgcccgactgggaaacgctgccttacgacaccttttcgccgcaccaggat
ctcgtctccgagcgtctcgcgacgctgcacgatctcggcgaaggacgctgcgacattctt
atcgtgcccgcgacgacggcgctgtaccgcatgccgccggcctcgtttctcgcggcctac
acgttttcgttcacgcaaggcgagcgcctcgacgaagcgaagctcaaggcgcaactgacg
ctcgcgggctacgagcacgtgagccaagtcgtgcgcccgggcgagtattgcgtgcgcggc
tcgctgatcgatctttatccgatgggctcggcgctgccttatcgcctcgatctgttcgac
gatcaggtggactcgatccgcgcgttcgatcccgacacgcagcgcagcctctacccggtg
cgcgacgtgcgcctgttgccgggccgcgagtttccgttcgacgaagccgcgcgcaccgca
ttccgcagccgctggcgcgaagtcttcgagggcgacccgagccgctcgcagatttacaag
gacatgggcaacggcgtgccgtcggcgggcatcgaatattatctgccgctgtttttcgac
gaaaccgcgacgctctttcactacctgccggaaggctcccagcttgtgttcgtcggcgac
atggacgcggcgatcaagcgcttcacgcacgacacgaagcagcggttcgacttcctttcg
cacgaccgcgagcgcccgctgctcgaaccgcgccggctctttctgaccgacgacgacttc
ttcaccttcgcaaagcccttcgcgcagctcaaattccctgcgacgcccgagggcggctgg
gcggtgccgctgccgggcctcgcgatcgaccgtcacgccgacgagccgctgctcgcactg
cgccattatctggagcagacggacaaccgcgtgatgctcgtcgccgaatcggcgggacgg
cgcgaaacgattcagcaattgctcgcggacaaccacctgcgcggcgagtcgcgcgacacc
ttcctcgaatggctcaccgccgacgcgaagttcacgctcggcatcgcgccgcttgcaaac
ggcttcgtgttgccctccgagaaactcgcgatcgtcaccgaaaccgagctatacggcccg
ctcgcgcgtcgagccggccggcggcggcaggaacaggcgagcaatgtcgattcgatggtg
cgcgatctcgccgaactgaagatcggcgatccggtcgtgcatgcgcaacatggcatcggc
cggtacatgggtctcgtgtcgatggacctcggcgaaggcgaaaccgagttcctgcacctc
gaatatcagaacgacgcgaagctgtacgtgccggtcgcgcagttgcacgtgatctcgcgc
tatagcggcgcggacccggacagcgcgccgttgcatcagctcggttccggccagtgggaa
aaggcgaagcgcaaggccgcgcagcaaatccgcgataccgcggccgaactgctgaatctg
tatgcgcgccgcgcatcgcgcgaaggctacgcgttcaagctcgaaccgcgcgattacacg
aagttcgcggagagcttcggcttcgaggagacgcccgatcaggcggcggcgatcgcatcg
gtcatcggcgacatgacgagcggcaaaccgatggaccggctcgtgtgcggcgatgtcggc
ttcggcaagacggaagtcgcgttgcgcgccgcgttcatcgcggtgatggcgggcaagcag
gtcgcgattctttcgcctacgacgctgctcgccgagcagcacacgcagaccttcaccgac
cgtttcgccgactggcccgtgcgcattgcggagctgtcgcgtttcaagaccggcaaggaa
gtctcgacggcgatacagcagatcaacgaaggcagcatcgatatcgtgatcggcacgcac
aagctcttgtcgagcgatgtgaagttcaagcggctcgggctcgtgatcatcgacgaggag
catcgctttggcgtgcgacagaaggaggcgctcaaggcgttgcgcgcggaagtcgacgtg
ctcacgctcaccgcgacgccgattccgcgcacgctcggcatggcgctcgaaggcctgcgc
gatttctccgtgatcgcgaccgcgccgcagaagcggctggcgatcaagaccttcgtgcgc
cgcgaggaagacggcgtgatccgcgaggccatgctgcgcgagctgaagcgcggcggccag
gtgtacttcctgcacaacgaagtcgagacgatcgaaaaccgccgcacgatgctggaggcc
ctcgtgcccgaggcgcgcatcgcggtggcacacgggcagatgcacgagcgcgagcttgag
cgcgtgatgcgcgatttcgttgggcagcgtgcgaacgtgctgctgtgcacgaccatcatc
gagaccggcatcgacgtgccgagcgcgaacaccatcctcatgcatcgcgcggacaagttc
ggtcttgcgcagctgcatcagttgcgtgggcgcgtggggcgctcgcatcaccaggcgtat
gcgtacttgctcgtgcacgatccgcagtcgctgacgaagcaggcgcagcgccgcctcgaa
gcgattcagcagatggaggaactcggttcgggcttctatctggcgatgcacgacctcgag
attcgcggcaccggcgaggtgttgggcgacaagcaatcgggcgagattcaggagatcggt
ttccagctttacaccgacatgctgaacgatgccgtgcgcgctttgaaggaaggacgcgag
ccggatctgaacgcgccgctcgcggcgacgaccgagatcaacctgcatgcgccggcgatt
ttgcccgccgattactgcggcgatgtgcaggagcgtttgtcgctgtacaagcggctggcg
aactgcgagtcgagcgatgcgatcgacggtattctcgaagagctcgtcgaccggttcggc
aagttgccgccgcaggcgcatgctttggtcgagacgcatcggttgaggctggcggcgaag
ccgctgggcatttccaagatcgatgcggcggagttgtcgatatcgttgcagttcattccg
aatcctccggtggatgggatgaagatcatcgagatggtgcagaagcataagcacatcaag
ttggcggggcaggataagttgcggatagaagcgcggagtccggatttggcggtgaggatt
tctactgtcaaggagacgctgcgggcgctgggggggccggttaggcaggcgcttgccgcg
cggtga
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