Burkholderia sp. CCGE1001: BC1001_1735
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Entry
BC1001_1735 CDS
T01424
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BC1001_1735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bug03400
]
BC1001_1735
Enzymes [BR:
bug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BC1001_1735
DNA repair and recombination proteins [BR:
bug03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BC1001_1735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADX55170
LinkDB
All DBs
Position
1:complement(1999859..2002813)
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AA seq
984 aa
AA seq
DB search
MNDRLDLYNRKRRFDETPEPAGTRPAKKRGSRGAARHEANAGLSYVIQEHHARRLHYDFR
LELNGALLSWAVPKGPCLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWDRGT
WEPVGGAAEAARAYRAGKLKFYLHGEKLHGGWTLVRSHMRGDADKEQWLLIKERDDEARD
ESEYDILEQRPGSVLSGQAAPAAQGQRGKQAAAGKTRAASVRGDPKRPDIVATRSSESLR
ELAASPAIEGAVKAKLPAALKPQLATLVDATPPGDDWSYEIKFDGYRVLARIDASAKAHQ
VQVFTRAGNDWTAKFGKQVKALGQLGLDSAWLDGEAVVLDENGVPNFQALQNAFDSNRPQ
DIVVYLFDVPFLNGYDLRGVPLQQRRALLRALLEPVDDSVLRFSNDFEFSAEDLLKSACD
MALEGIIGKRRDSGYMSGRSATWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLLGVHDSK
GKLQYAGRVGTGFDAALLRSVKKELDAHETKRMPFANVPRERSRTPVHWVEPVLVAECNF
AEWTSEGIVRQASFVSLRKDKPARQIVKEAPRKGDDVQQQTDIEAGAAPKKRAARGGAAA
GEGDAGSRSAGNKSAAKETSKATAKAAEKETGDKQAKAKAQAEAQPAAKTAAKTAAKTAS
KSGGSPKRSAAGETASSPATSRANKSSSPTEVAGVRISHPDRVIDKSTGARKIDLVQYYE
SVAPWMLAHLVDRPVSLVRAPEDIGGELFFQKHTQKLSIPNITQHPGLDPGHPPLLTVDS
AKALVGAAQMGTIEFHTWNGVASNIEKPDRVVFDLDPDPSLGWDRMIEAALLTRSLLEEL
GLTSFCKTSGGKGLHVVVPLSKHAGWDEVKDFSQAVAQHMASTLPKYFSAKMGAQNRKQK
IFVDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDEVAQTTGGAQWNIENLHERLADLKS
DPWADYPKTRQRITAAMRKRLSGA
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacagactcgacctctacaaccgcaagcgccgcttcgacgaaacgccggagccc
gcaggcacccgtccggcgaagaagcgcggcagccgcggcgcggcgcgccacgaagccaac
gcgggcctgtcgtatgtcattcaggagcatcacgcgcggcgtctgcactacgacttccgg
ctcgaactgaacggcgcgctgctgtcatgggcggtgccgaaagggccgtgtctggatcct
tcagtgaagcggcttgccgtgcatgtggaagaccatcccgtggaatacggctcgttcgaa
ggggagatcccgcctggcaactacggcgcgggcacggtcatcgtatgggatcgcggcacg
tgggagccggtcggcggcgcggccgaagcagcgcgcgcttaccgcgccggcaagctcaaa
ttctacctgcacggcgagaagctgcacggcggctggacgctcgtgcgcagccacatgcgc
ggcgacgcggacaaggagcagtggctgctcatcaaggagcgcgatgacgaagcgcgcgac
gagagcgaatacgacatcctcgaacagcggccaggcagtgtgctgagcggccaggcagcg
cctgccgcgcaaggacaacgcggcaagcaggcggccgcgggcaaaaccagggcagcgtcg
gtgcgcggcgatccaaagcgcccggacattgtcgccacgcgcagcagcgagtcgctgcgc
gaactggccgcgtcgcccgcgatagaaggcgcggtgaaggcgaaactgcccgccgcgctc
aagccgcaactcgccacgctcgtcgatgccacgccgcccggcgacgactggtcgtatgaa
atcaagttcgacggctatcgcgtgctggcccgcatcgacgcaagcgcgaaagcgcatcag
gtgcaggtgttcacgcgcgcgggcaacgactggacggcgaaattcggcaagcaggtcaag
gcgttggggcagctcgggctcgacagcgcgtggcttgacggcgaagcggtcgtgctcgac
gagaacggcgtgccgaatttccaggcactgcaaaacgccttcgattccaaccgtccgcaa
gacatcgtcgtgtatctgttcgacgtgccgtttttgaacggctacgacttgcgcggcgtg
ccgctgcaacagcgccgcgcgcttctgcgtgcgctgctcgaaccggtcgacgacagcgtg
ctgcgcttttcgaacgactttgagttcagcgccgaggacctcctgaaaagcgcctgcgac
atggcgctcgaaggcatcatcggcaagcggcgcgacagcggctatatgtccggccgctcg
gccacgtggatcaaactgaagtgccggcggcgccaggagttcgtgatcggcggctattcc
gagccgtcgggcagccgcgcggcgttcggcgcgctgctgctcggcgtgcatgacagcaag
ggcaaactgcagtatgccggccgcgtcggcaccggcttcgacgccgcgttgctgcgctcg
gtgaagaaggaactcgatgcgcacgaaacgaagcgcatgccgttcgcgaacgtgcctcgc
gagcgcagccgcacgccggtgcattgggtcgagccggtgctcgtcgcggaatgcaatttc
gccgaatggacgagcgagggcatcgtgcggcaggcgtcgttcgtgagtctgcgcaaagac
aagccggcgcgccagatcgtcaaggaagcaccacgcaaaggggacgacgtgcaacagcaa
accgatatcgaggccggcgcggcgccgaaaaaacgcgccgcgcgcggcggggcggcagca
ggcgagggcgatgccggctcgcggagcgcgggcaacaagagcgccgcgaaagaaaccagc
aaggcaaccgcgaaagcagcggaaaaggaaacgggggataagcaggcgaaagccaaggct
caagccgaggcgcaacctgcggctaaaaccgccgctaaaactgccgctaaaaccgcgtcc
aagtccggcggctcaccgaaacgcagcgcggccggcgaaaccgcgagctcacccgccacg
tcccgcgcgaacaaatcctcgtcgccgacggaagtcgcaggtgtccgcatatcgcatccg
gaccgcgtgatcgacaaaagcaccggtgcgcgcaagatcgatctcgtgcagtactacgaa
tcggttgcgccatggatgttggcgcatctggtcgaccggcctgtgtcgctcgtgcgtgcg
ccggaggacatcggcggcgagctgttctttcagaagcacacgcagaagctctcgatcccc
aacatcacgcagcaccccgggctcgaccccgggcatccgccgcttctcaccgtggacagc
gcgaaggcgcttgtcggtgcggcgcaaatgggcacgatcgaatttcacacctggaacggc
gtggcgtcgaatattgagaagcccgaccgcgtcgtgttcgacctggaccccgatccgtcg
ctcggctgggacaggatgatcgaggccgcgctgctcacgcgctcgctgctggaagaactc
ggcctcacgtcgttctgcaagacgagcggcggcaagggcttgcacgtcgtcgtgccgctg
tcgaagcacgcgggctgggacgaagtgaaggacttctcgcaggccgtcgcgcagcacatg
gcgagtacgctgcccaaatacttcagcgcgaagatgggcgcgcagaaccgcaagcagaaa
attttcgtcgactatttgcgcaataaccgcggctccagcaccgtcgctgcgttttcggcg
cgggcgcggccgggactcggcgtgtcggtgccgctcgcatgggacgaagtcgcacagacc
accggcggcgctcagtggaatatcgagaacctgcatgagcgcctcgctgatctgaagagc
gacccatgggccgactatccgaagacgcggcagcgcattacggcggccatgagaaagcgt
ttgagcggcgcgtag
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