Stenotrophomonas maltophilia JV3: BurJV3_0025
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Entry
BurJV3_0025 CDS
T01596
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
buj
Stenotrophomonas maltophilia JV3
Pathway
buj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
buj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BurJV3_0025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buj03400
]
BurJV3_0025
Enzymes [BR:
buj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BurJV3_0025
DNA repair and recombination proteins [BR:
buj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BurJV3_0025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEM49361
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Position
27055..29529
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AA seq
824 aa
AA seq
DB search
MSLHQYRRKRRLGGGAGQTPEPDETPARTDPKRRPIFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVDVFDHGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRSDEEARDAEADDLLGAPAVM
KRTAGKTGRAVPAARTSTRKADARWHARALKLDGARDAPYPHGFKPQLTDHRDSAPDGAH
WLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTDDFPEVVQAVRALPVRDARLDGELVVLD
PEGRSDFAALQRVIDGSSKQPLRYIVFDLPGVANADVSRAPLLERKALLKDLIGPTPGIL
AFSEHVIDHGPQVFDASGEAGFEGIVSKQVDAPYVNARARSWVKVKHEDTDEFVIVGYTA
PRGSRVGFGSLLLATPDKEGLRYVGRVGTGFDDENLRALFKALQPLAVKTPVLQLPAHVP
FRAASVRWLKPVRVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGMSTATADAEVGGEV
QITHPERVVFPRQRLSKGDVADYYRRMARWILPEIAGRPLSLLRCPDGVGKACFFQKHHG
PGLGDAVHAVPLQQKSGREDYVYIDDARGLLQLVQMNTLELHPWGATVADPEHPDRLVFD
LDPGDGVSWAQVKAGARDVRDRLQQVGLESFVRLSGGKGVHVVVPLQPKAGWDEAKAFCE
AFAQAMAQEQPDRYVATMSKAKRRGVIFIDWLRNTRGATSVCSWSLRARDSAGVAVPLRW
EELARVSAADAFPMGKALARAKRLKGDPWQGIARLKQTLPSLKQ
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgcaccagtacaggcgcaagcgccgacttggtggtggcgccgggcagacgccg
gaacctgacgaaacgcctgcacgcactgatcccaagcggcggcccatcttcgtcatccag
ctgcaccatgccagttcgcgccactacgacttccgccttgaaatggacggtgtactgaag
agctgggcggtgccgaagggaccttcgctgcgtgtcggtgagaagcgactggccgtggaa
gtggaagaccatccgctgtcctacgccggtttcgaaggagacattcctgaaggccactat
ggtgctggccacgtggatgtgttcgatcacggcacctgggcctgtgagggcgatccattg
caggcgctggccgccggaaagatcgatttcgtgctgcacgggcagcgcctggccggtggc
tggaagctggtgcgcacggcaatgaaggggcgtcaggtgcagtggctgctgatcaagcgc
agtgacgaggaagcgcgcgacgccgaagcagatgatctgctgggcgcgcccgcagtgatg
aagcgcactgcggggaagacagggcgtgctgtgccggccgcacgcacgtctacccgcaag
gccgatgcacgctggcatgcgcgcgcgctgaaactggacggcgcacgtgacgcgccctac
ccgcatgggttcaaaccgcaattgaccgatcatcgagacagtgcgccggacggcgcgcac
tggctgcacgagatcaagtgggacggctatcgcctgttggccgatctgcatgacggcgag
gtaaagctgcgctcccgcaatggcctggattggaccgacgatttccccgaggtggtacag
gccgtgcgggcgctgccggtgcgtgatgcgcgcctggacggtgagctggtggtgctggac
ccggaagggcgcagcgatttcgcagcgctgcagcgcgtgatcgatggaagctcgaagcaa
ccgctgcgctacatcgtgttcgatcttccgggtgtggccaacgcggacgtcagtcgtgcg
ccattgctggaacgcaaagcgctgctgaaggatctcatcggacccacgcccggcatcctg
gccttcagcgaacatgtgatcgaccacggcccgcaggtattcgatgccagtggcgaggcg
ggattcgaaggcatcgtcagcaagcaggtggacgcgccgtacgtgaacgctcgcgcccgc
agctgggtgaaggtgaagcacgaagacaccgacgagttcgtgattgtcggctacacggcc
cccaggggctcgcgggtgggtttcggatcattgttgctggcaacaccggacaaggagggc
ctgcgctatgttggccgcgttggtaccggcttcgatgacgagaacctgcgcgcgctgttc
aaggcattgcagccactggcagtaaagacccccgtgctgcagcttccggcgcatgtgccg
ttccgcgctgccagcgtgcgctggctgaagccggtgagggtggcggaagtggccttccgt
ggctggggcaaggaaggcctgctgcgccaggcaagtttcaagcggctgcgcagcgacaag
cagaaggaggacctgggaatgagcacagcaacggcagatgctgaagtcggaggcgaggtc
cagatcactcatccggagcgggtggtgtttcccaggcagagactgagcaaaggcgacgtg
gccgactattaccggcgcatggcgcgctggatcctgcccgagatcgccggacgtccgctg
tcactgctgcgctgccccgatggggtgggcaaggcctgtttcttccagaagcatcatggc
cccggcctgggtgacgcggtgcatgcagtgcccctgcagcagaagagtggccgcgaggat
tacgtctacatcgatgatgcgcggggcctgctgcagctggtgcagatgaacacgctggag
ctgcatccatggggtgcgaccgtggccgacccggagcatccggatcgactggtgttcgat
ctcgaccctggcgacggcgtcagctgggcacaggtgaaagccggtgcacgcgatgtgcgt
gaccgcctgcagcaggtgggtctggagagcttcgtgcgactgtctggcggcaagggggtg
cacgtggtggtgccactgcagcccaaggctggctgggacgaggcgaaggcattctgcgaa
gcctttgcgcaggcaatggcacaggagcaacctgatcgctatgtggcgacgatgagcaag
gccaagcgccgtggcgtcatcttcatcgactggttgcgcaacacccggggggccaccagc
gtgtgctcgtggtcgctgcgcgcgcgcgattccgccggtgtggcagtgccactgcgctgg
gaagaactggcgcgggtgagcgcggccgacgcgtttccgatgggcaaggcgctggcgagg
gcgaagcggctgaagggggacccatggcagggcatcgcacggttgaagcagacgctgccg
tcgctgaagcagtag
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