Burkholderia sp. PAMC 26561: AXG89_12715
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Entry
AXG89_12715 CDS
T05481
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bum
Burkholderia sp. PAMC 26561
Pathway
bum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXG89_12715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bum03400
]
AXG89_12715
Enzymes [BR:
bum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXG89_12715
DNA repair and recombination proteins [BR:
bum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXG89_12715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
DUF4217
Motif
Other DBs
NCBI-ProteinID:
AME24590
UniProt:
A0A120KXW3
LinkDB
All DBs
Position
1:complement(2775375..2778866)
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AA seq
1163 aa
AA seq
DB search
MPSKAVSLQSTSPIALVKAGQRFAFDGATGSSDALALARYHLANRENVPLLVVMCASAVD
SQRLSVEIPFFAPDARVRLLPDWETLPYDTFSPHQDLVSARLATLHDLGEGRCDILLVPA
TTALYRMPPASFLAAYTFSFTQGERLNEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLLD
LFPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEPARTAFRSR
WREVFEGDPSRSSIYKDIGNGVPAAGIEYYLPLFFDETATLFHYLPQDAQLAFVGDMDAA
IKRFTNDTKQRYNFLSHDRERPLLEPKRLFLSDDDFFSFAKPFAQIKFPPSPEGGWAVPL
PGLAVDRHAEDPLLALRHYLEQTPNRVLLATESAGRRETIQQLLADNGLRAAIDDTFQQW
LTGDAKFSLGVAPLSNGFSLPGEGLSIVTETELYGQLTRRAGRRRQEQASNVDSMVRDLS
ELKIGDPVVHTQHGIGRYMGLVSMDLGEGETEFLHLQYQNETKLYVPVAQLHVISRYSGA
DPDTAPLHTLGSGQWDKAKRKAAQQIRDTAAELLNLYARRALRQGHAFPLEARDYAKFAE
SFGFEETPDQAAAITAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVAIL
SPTTLLAEQHTNTFTDRFADWPVKIAELSRFKSTKEVAGSIQAINDGTVDIVIGTHKLLS
SDVVFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSI
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRSMLEKLVPE
ARIAVAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPAALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIHEIGFQLYTDMLNDAVRALKEGREPDLNAPLAATTEINLHAPAILPAD
YCADVQERLSLYKRMANCESSDAIDSILEELIDRFGKLPPQASALVETHKLRLAAKPLGI
LKIDAAEHVISLQFVPNPPVDAMKIIEMVQKNKHIKLAGQDKLRIEVRSPDLAVRISTVK
ETLRALGAPVRQQKPAAAIAPSR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaaaagccgtcagtttgcagtcaacgtctcctatcgcactcgtcaaggccggt
cagcgctttgccttcgatggcgccaccggttcctccgacgcgctcgctctcgcgcgttac
cacctcgcaaaccgcgaaaacgtcccgttattggtcgtgatgtgcgcgagcgcggtggat
tcccaacgtctttcggtcgaaatcccgttcttcgcgccggacgcccgggtcaggctgctg
cccgactgggaaacgctgccctacgacacgttttcaccccatcaggacctggtttcagcg
cgccttgcgacgctgcacgacctcggtgaaggccgttgcgacatcctgctcgtgcccgcc
accacggcgttgtaccggatgccgccggcatcgttcctggccgcgtacacgttctcgttc
acgcagggcgagcggctcaacgaggcgaaactcaagagccagttgacgctcgcggggtat
gagcatgtgagccaggtcgtgcgtccgggcgaatactgcgtgcgtgggtcgttgctggat
ctgtttccgatgggctcgccgctgccgtaccggatcgatttgttcgacgatcaggtggat
tccatccgcgccttcgatccggacacgcaacgcagtttgtacccggtccgcgatgtgcgt
ctgcttccagggcgcgaatttcccttcgatgaacccgcccgcaccgccttccgcagccgc
tggcgcgaggttttcgaaggcgatccgagccgttcatccatatacaaggacatcggcaat
ggtgtgccggcagcgggtatcgagtactacctgcccttgttcttcgacgaaacagccacg
cttttccactatttgccgcaagacgcgcaactggcgttcgtcggcgacatggacgcggca
atcaagcgcttcacgaacgacacgaagcagcgctacaacttcctgtcgcatgaccgcgag
cggccgctgctcgaaccaaagcgtctctttctttccgacgacgacttcttttccttcgcc
aaaccgttcgcgcagatcaagtttccgccctcgcccgagggcggctgggccgtgccgctg
ccgggccttgccgtggatcggcatgccgaagatccgttgctcgcgctgcgccattacctg
gagcaaacgcccaatcgcgtgctgctcgccacggaatcggcgggtcgtcgcgagacgatc
cagcagcttctcgccgacaacgggctgcgcgccgccatcgacgacacgttccagcaatgg
ctgacgggcgacgccaagttttccctgggcgtcgcgccgctctcgaacggcttttcgttg
ccgggcgaaggtctctcgatcgtcaccgaaaccgagctatacggacaactcacgcgccgc
gccggacgacgccgccaggaacaggcgagcaacgtcgactcgatggtgcgcgacctctcc
gagctgaaaatcggcgatccggtcgtgcatacgcagcacgggatcggacggtatatgggg
ctggtatcgatggatctcggcgaaggcgagaccgagtttctccatttgcaatatcagaac
gaaaccaagctctacgtgccggtcgcgcagcttcatgtgatttcgcgctacagcggcgcg
gacccggacaccgcgccgttgcacacgctcgggtcgggccagtgggacaaggcaaaacgc
aaggctgcgcagcagatccgcgataccgccgccgagctgctcaacctttacgcgcggcgg
gcgctgcgccagggccacgcgttcccgctcgaagcgcgcgactacgcgaagttcgccgaa
agtttcggcttcgaggaaacgccggatcaggccgcggcgattaccgctgtcatcggcgat
atgacgagcggcaagccaatggaccgtctggtctgcggcgacgtgggtttcggcaagacg
gaagtcgcgctgcgggcggcgtttatcgcggtgcttggcggcaaacaggtcgcgatcctc
tcgcccaccaccctgctcgccgaacagcacacgaacaccttcaccgaccgtttcgccgac
tggcccgtgaagatcgccgagctgtcgcgcttcaagagcacgaaggaagtggcagggtcg
atccaggcgatcaacgacggcactgtcgatatcgtcatcggtacgcacaagctgctgtcc
agcgacgtggtgttcaagcggctggggctcgtgatcatcgacgaggaacaccgtttcggt
gtgcggcagaaggaagcgttgaaggcgctgcgcgctgaagtcgatgtgctcacgctcacc
gccacgcccattccgcgcacgctcggcatggcgctggaaggcttgcgcgacttttcgatc
atcgcgaccgcgccgcaaaaacgtctcgcgatcaagaccttcgtgcgccgcgaggaagat
ggcgtgatccgcgaggcgatgctgcgcgagctcaagcgcggcggtcaggtttatttcctg
cacaacgaagtcgagaccattgaaaaccgtcgttcgatgctcgaaaaactcgtgcccgaa
gcgcgcatcgcggtcgcgcacggacaaatgcatgaacgcgaactcgagcgcgtaatgcgc
gacttcgtcggccagcgcgcgaacgtgctgctgtgcacgacgattatcgaaaccgggatc
gacgtgccgagcgcaaacaccatcctgatccatcgcgccgataaattcggcctcgcgcag
ttgcatcagttgcgtggccgtgtcgggcgttcgcaccatcaggcgtatgcgtacctgctc
gtgcacgatccggccgcgctcacgaaacaggcgcagcggcggctggaagcgatccagcag
atggaagaactcggttcgggcttttacctcgccatgcacgatctggaaattcgcggcacg
ggcgaagtgctcggcgacaaacaatcgggcgagatccacgagatcggtttccagctctac
accgacatgctcaacgacgccgtgcgtgcactgaaagagggccgcgaaccggacctgaac
gcgccgctcgccgccacgaccgagatcaacctgcacgcgcccgcgatcctccccgccgac
tattgcgccgacgtgcaggaacgtttgtcgctgtacaagcgcatggcgaactgcgaatcg
agcgatgccatcgactcgatcctggaagaactcatcgatcgtttcggcaagctgccgccg
caggctagcgcactggtcgagacccacaagctgcggctcgccgccaaaccgctggggatc
ctgaagatcgatgcggcggaacatgtgatctcgctgcagttcgtgccgaacccgcctgtc
gacgccatgaagatcatcgagatggtgcagaagaacaagcacatcaagctcgcggggcag
gacaagctgcgcatcgaagtgcgcagtccggacctcgcggtgcggatttcgacggtcaag
gaaacgttgcgcgcactcggcgcgccggtgcggcaacagaaaccggctgccgccatcgca
ccatcgcgttag
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