Burkholderia sp. HB1: AC233_07635
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Entry
AC233_07635 CDS
T04094
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
buq
Burkholderia sp. HB1
Pathway
buq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
buq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AC233_07635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buq03400
]
AC233_07635
Enzymes [BR:
buq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AC233_07635
DNA repair and recombination proteins [BR:
buq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AC233_07635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALE54602
LinkDB
All DBs
Position
1:1767306..1770104
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AA seq
932 aa
AA seq
DB search
MNDRLDLYNRKRRFDETPEPAGTAAKKRGSRGATRPTVEQGLSYVIQEHHARRLHYDFRL
ELNGALLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGTFEGEIPPGNYGAGTVIVWDRGTW
EPVGGPAEAARAYRAGKLKFHLHGDKLHGGWTLVRSHMRGDADKEQWLLIKERDDEARDE
SEYDILAERPGSVLSGAAPSAGKGKAGKQSAGKTRTASVRGDPKRPDIVATRSSESLREL
AASPAIEGAVKAKLPASLKPQLATLVDATPPGDDWTYEIKFDGYRVLARIDASEKSRGVQ
VFTRAGNDWTAKFSKQVKAFAQLGLDSAWLDGEAVVLDENGVPSFQALQNAFDSNRPQDI
VVYLFDVPFLNGYDLRGVPLQQRRAILRALLEPVDDSVLRFSNDFEFSADDLLKSACDMA
LEGIIGKRRDSGYVSGRSATWIKLKCRRRQEFVIGGYSEPSGSRAAFGALLLGVHDSKGK
LQYAGRVGTGFDAALLRSVKKELDAHETKRMPFASTPRERSRTPVHWVEPVLVAECNFAE
WTSDGIVRQASFVSLRKDKPARQIVKEAPRKGDDVQQQTDIEAEVAPKKRAARGEANKTA
TKSASKVATKTASKVATKSATQNSAEPTAPRAKKSSPAEVAGVRISHPDRVIDKSTGARK
IDLVQYYESVAQWMLPHLIDRPVSLVRAPEDIGGELFFQKHTQKLSIPNITQHPGLDPGH
PPLITVDSAKALVGAAQMGTIEFHTWNGVASNIEKPDRVVFDLDPDPSLGWDRMIEAAML
TRSLLEELGLTSFCKTSGGKGLHVVVPLSKHAGWDEVKEFSQAVAQHMASTLPKYFSAKM
GAQNRKQKIFVDYLRNNRGSSTVAAFSVRARPGLGVSVPLAWDEVAQTTGGDQWNIENLH
ERLDELKGDPWADYAKTRQRITAAMRKRLSGA
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacagactcgacctctataaccgcaagcgccgcttcgacgaaacgccggagccc
gcgggcaccgccgcgaaaaagcgcggcagccgcggcgccacccggccgacagtcgaacag
ggcctctcctacgtgatccaggaacaccacgcacggcgtctgcactatgacttccggctc
gaactgaacggcgcgctgctgtcgtgggccgtgccgaaagggccgagcctcgatccgtca
gtgaagcgcctcgccgtgcatgtcgaagaccatccggtcgaatacgggacgttcgaaggc
gagattccgccgggcaattacggcgcgggcacagtcatcgtatgggaccgcggcacgtgg
gaacctgtcggcggcccggccgaagcggcgcgcgcgtatcgcgcgggcaagctcaagttc
catctgcacggcgacaagctgcacggcggctggacgctcgtgcgcagccacatgcgcggc
gacgcggacaaggaacagtggctcctcatcaaggaacgcgacgacgaggcgcgcgacgaa
agcgaatacgacattctcgccgaacggcccggcagcgtgctgagcggcgccgcgccgtct
gcggggaagggaaaagccggcaagcagagcgccggcaaaaccagaaccgcctcggtgcgc
ggcgatccgaagcgccccgacatcgtcgcgacacgcagcagcgagtcgctgcgcgaactc
gccgcatcgcccgcgatagaaggcgcggtgaaggccaaactgcctgcatcgctgaagcct
caactggcgacgctcgtcgacgcgacgccgcccggcgacgactggacatacgaaatcaag
ttcgacggctatcgcgtgctggcccgcatcgacgcaagcgagaaaagccgcggcgtgcag
gtcttcacgcgcgcgggcaacgactggaccgcgaaattcagcaagcaggtgaaggcgttc
gcgcaactgggcctcgacagcgcgtggctcgacggcgaagccgtggtgctcgacgaaaac
ggcgtgccgagtttccaggcgctgcaaaacgcgttcgattcgaaccgtccgcaagacatc
gtcgtctatctgttcgacgtgccgtttttgaacggctacgacttgcgcggcgtgccgctg
caacagcgccgcgcgattttgcgcgcgctgctggagcccgtcgacgacagcgtgctgcgt
ttttcgaacgacttcgagttcagcgccgacgatctgctgaaaagcgcgtgcgacatggcg
ctcgagggcatcatcggcaagcggcgcgacagcggctatgtgtccggccgctcggccacg
tggatcaagctgaagtgccgtcggcggcaggagttcgtgatcggcggctattcggaaccg
tcgggcagccgtgcggcgttcggtgcgctgctgctcggcgtgcacgacagcaagggcaaa
ctgcagtatgcggggcgcgtgggcaccggtttcgacgccgcgttgctgcgctcggtgaag
aaggaactcgacgcgcacgaaacgaagcgcatgccgttcgcgagcacaccgcgcgagcgc
agccgcacgcccgtacattgggtcgagccggtgctcgtcgcggaatgcaatttcgccgaa
tggacgagcgacggcatcgtgcgtcaggcgtcgttcgtgagtctgcgcaaggacaagccg
gcgcgccagatcgtcaaggaagcaccacgcaagggggacgacgtgcaacagcaaaccgac
atcgaggccgaggtcgcgccgaaaaagcgtgcggcgcgcggcgaggccaacaaaaccgcc
accaaatccgccagcaaagtggccacgaaaaccgcgagcaaagtagccaccaaatccgcc
acccaaaactcagccgaacccaccgcaccgcgagccaaaaaatcctcgcccgccgaagtc
gccggcgtccgcatctcgcatcccgaccgcgtcatcgacaagagcaccggcgcgcgcaag
atcgacctcgtgcagtactacgaatccgtcgcgcaatggatgctgccgcatctcatcgac
cgacccgtgtcgctcgtgcgcgcgccggaggacatcggcggcgagctgttttttcagaag
cacacgcagaagctgtcgattccaaacatcacgcagcatcccgggctcgatccgggtcat
cctccgctgatcaccgtcgatagcgcgaaggcgctcgtcggcgccgcgcaaatgggcacg
atcgaatttcacacatggaacggcgtggcgtcgaacatcgaaaagcccgaccgtgtggtg
ttcgatctcgacccggacccgtcactcggctgggaccggatgatcgaggccgcgatgttg
acgcgctcgctgctcgaggaactcggcctcacgtcgttctgcaagacgagcggcggcaaa
ggtcttcacgtggtcgtgccgctctcgaaacacgcgggctgggacgaggtgaaggagttc
tcgcaggccgtcgcgcaacacatggcgagcacgctgcccaagtacttcagcgcgaagatg
ggcgcgcagaatcgcaagcagaagattttcgtcgactatctgcgcaataaccgcggctcg
agtaccgtcgccgcgttttcggtgcgggcgcgtcccggcctcggcgtttcggttccgctt
gcttgggacgaagtcgcgcaaacgacgggcggcgaccagtggaatatcgagaacctgcac
gagcgcctcgacgaactgaagggagacccgtgggccgattatgcaaagacgcggcaacgc
attacggcggcgatgaggaagcgtctgagcggtgcgtag
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