Burkholderia sp. HB1: AC233_07710
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Entry
AC233_07710 CDS
T04094
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
buq
Burkholderia sp. HB1
Pathway
buq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
buq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AC233_07710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buq03400
]
AC233_07710
Enzymes [BR:
buq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AC233_07710
DNA repair and recombination proteins [BR:
buq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AC233_07710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALE54615
LinkDB
All DBs
Position
1:complement(1786548..1790030)
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AA seq
1160 aa
AA seq
DB search
MPDIAATSQYSPPVALVKAGQRFAFDGTHGSSDALLIARYHLAYREKVPLLAVVCESAVD
AQRLSQEIGFFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPA
TTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLLD
LYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSR
WRETFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQGAQLAFIGDLDAA
IRRFTNDTKQRYNFLSHDRDRPILEPQRLFLTDEDFFTLAKPFARLVLPANAGGGWATPL
PNLAIDRHADDPVSALRAFLDTTPNRVLFAAESAGRRETLLQLLADNHLKPASSDSFQDW
LIGDARFSLGVAPLANGFAVPVDGIAIITETELYGPLARRAGRRRQEQASNVDSMVRDLS
ELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGA
DPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEPKDYVKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALL
SPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLS
SDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVPE
ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKDGKEPDLTAPLAATTEINLHAPAILPAD
YCGDVQERLSLYKRLANCEHSDSIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGI
SKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLAVRVATVK
ETLRALGSPSRGTAAATAAR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccagatatcgccgcaacatcgcagtactccccgcccgtcgcgctcgtcaaggccggc
cagcgtttcgccttcgacggcacgcatggctcgtccgacgcgctgctgatcgcccgctac
catctcgcctatcgcgagaaggtgccgttgctcgcggtcgtctgcgagagcgcggtcgat
gcacagcggctgtcgcaggaaatcggctttttcgcgccggacgcgcgcgtgcgcctgctg
cccgactgggaaacgctgccttacgacaccttttcgccgcaccaggatctggtctccgag
cgcctcgccacgctgcacgatctcggcgagggccgctgcgacatcctgctcgtgcccgcc
accacggcgctgtaccggatgccgcccgcgtcgtttctcgcggcctatacgttctcgttc
tcgcaaggcgagcgcctcgacgaggccaagctgaaagcgcagctcacactggccggctac
gaacacgtgagccaggtcgtgcgccccggcgaatactgcgtgcgcggctcgctgctcgat
ctttacccgatgggctcgcccttgccctaccggatcgatctgttcgacgaccaggtggat
tcgatccgcgcgttcgatcccgacacgcagcgcagcctttatccggtgaaagacgtgcgg
ctcttgccgggccgcgaattccccttcgacgaagccgcgcgcaccgcgtttcgcagccgc
tggcgcgagacgttcgagggcgatccgagccgcgcgtcgatctataaggacatcggcaac
ggcgtgccgtcggcgggcatcgaatattatttgccgcttttcttcgacgagacggctacc
ctcttccactatttgccccaaggcgcgcaactcgcgtttatcggcgatctggatgcggcg
atccggcgcttcaccaacgacaccaagcagcgctacaacttcctgtcgcacgatcgcgac
cggcccattctcgagccgcagcgcctctttctgacggacgaggatttcttcacgctcgcc
aagcccttcgcgcgcctcgtgctgccggccaacgcgggcggcggttgggcgacgccgctg
ccgaacctcgcgatcgaccgtcacgcggacgatcctgtctccgcgttgcgcgcgtttctc
gacacgacgccgaaccgcgtgctgttcgccgcggaatcggcgggccgccgcgaaacgcta
ttgcagttgcttgcggacaatcatctgaagcccgcgtcgagcgacagcttccaggactgg
ctcatcggcgacgcgcgtttttcgctcggcgtcgcgccgcttgcgaacggctttgcggtg
ccggtcgacggcatcgcgatcatcaccgagaccgagctttacggaccgctcgcgcgacgc
gccgggcgacgtcgtcaggaacaggcgagcaacgtcgattcgatggtgcgcgatctgtcc
gagctgaaggtcggcgatccggtcgtgcattcgcagcacggcattggccgctacatgggc
ctcgtcacgatggacctgggcgaaggcgaaaccgagttcctgcacctcgaatacgcgggc
gacagcaagctctacgtgccggtcgcgcaactgcatgtgatctcgcgctatagcggcgcc
gacccggaaagcgcgccgctgcattcgctcggctcgggtcaatgggagaaggccaagcgc
aaggccgcgcagcagattcgcgacacggccgccgagctgctgaacctttacgcgcgccgc
gccgcgcgctcgggccacgcgttcgcgctcgaaccgaaagactatgtgaagttcgccgag
agcttcggtttcgaggaaacgccggaccaggccgcggccatcgccgccgtgatcggcgac
atgacgagcggcaagccgatggaccgtctggtatgcggcgacgtgggcttcggcaagacc
gaggttgcattgcgcgcggcgtttatcgcggtgatgggcggcaagcaggtcgcgctcctc
tcgcccaccacgctgctcgccgaacagcatacgcaaaccttcacggaccgcttctccgac
tggccggtgcgtatcgccgaactgtcgcgcttcaagtcgaccaaggaagtgaacgccgcg
atccagcagatcaacgaaggcagcgtcgatatcgtgatcggcacgcacaagctgctctcg
tcggatgtgcagttcaagcggctcgggctcgtgatcatcgacgaagaacaccgcttcggc
gtgcgtcagaaagaagcgctcaaagcgttgcgcgcggaagtggacgtgctcacgctgacc
gccacgccgattccgcgcacgctcggcatggcgctcgaagggctgcgcgatttctctgtg
atcgcgaccgcgccgcaaaagcgtctggcgatcaagaccttcgtgcgtcgcgaggaagaa
agcgtgattcgcgaagccatgctgcgcgaactgaagcgcggcggccaggtttactttttg
cataacgaagtcgagaccatcgagaatcgccggcagatgcttgaagcgctcgtgcccgaa
gcacgcatcgcggtcgcgcatgggcagatgcacgagcgcgaactcgaacgcgtgatgcgc
gacttcgtcgcgcaacgcgcgaacgtgctgctgtgcacgacgattatcgaaaccggcatc
gacgtgccgagcgcgaatacgatcctgattcatcgctcggacaagttcggtcttgcgcaa
ttgcaccagttgcgcggacgcgtcgggcgctcgcatcaccaggcgtacgcgtatctgctc
gtgcacgatccgcaaggtctgacgaagcaggcgcagcgccggctcgaggcgatccagcag
atggaggaactcggttcgggcttctatctggccatgcacgatctggagattcgcggcacg
ggcgaagtgctcggcgacaagcagtcgggcgagattcacgagatcggtttccagctttac
accgacatgctcaacgacgccgtgaaggcgctgaaggacggcaaggagcccgacctcacc
gcgccgcttgccgcgacgaccgagatcaatctgcatgcgcccgcgattctgcccgccgac
tattgcggcgacgtgcaggaacgtctgtcgctctacaagcggctcgcgaattgcgagcac
agcgattcgatcgacggcattcaggaagagctgatcgaccgcttcggcaagctgccgccg
caggcgcatgcgcttgtcgagacgcatcggctgaggctggcggcgaagccgttgggcatc
tcgaagatcgacgcgggcgaagccgtgatcggcttgcagttcattccgaatccgccaatc
gacgcgatgcgtatcatcgagatggtgcagaagcacaagcacatcaagctcgcgggccag
gacaaactgcgcattgaaacgcgcagtcccgaccttgcggtgcgcgtcgcgaccgtcaag
gagaccttgcgcgcactcgggtcgccgagccgcggtacggccgcggcaacggcggcgcga
tga
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