Bombus vancouverensis nearcticus: 117157980
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Entry
117157980 CDS
T07628
Name
(RefSeq) general transcription factor IIH subunit 4 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03022
Basal transcription factors
bvan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117157980
09124 Replication and repair
03420 Nucleotide excision repair
117157980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvan03021
]
117157980
03400 DNA repair and recombination proteins [BR:
bvan03400
]
117157980
Transcription machinery [BR:
bvan03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117157980
DNA repair and recombination proteins [BR:
bvan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117157980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
117157980
NCBI-ProteinID:
XP_033192261
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MSNTISGKNLLRPAGLQCKNLQEYLKSRPPEVLNKLYHNPPICLAVFRELPVIAKHYVMR
LLFVEQPVPQAVIASWCSKLHFEEHQKVVLILNELNVWKEASIPGGLPGWILNTTFKKNL
KIVLLGGGKPWTMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRI
LLHAGLMKRDEADGSPVITQAGFQFLLLETASQVWYFILQYLDTIEARGLDLVECLTFLF
QLNFSTLGKDYSTEGMSEGLSTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGQNKPL
SRDPEKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKS
GITAAQIVGYLQQHAHGKMIEAGPPVLPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQT
DFEVLRDHALSTGVLIWQNERKRTIVVTKAGHDDVKKFWKRYSKGSS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatacaataagtggaaaaaacttgttacggccagctggattgcaatgtaaaaat
cttcaagaatatttaaaatcacgtccaccagaagtattaaacaaattatatcataatcct
ccaatttgcttggctgtgtttcgggaattgccagtaatagcaaaacattatgttatgcga
ttattatttgttgaacaacctgtacctcaagcagttattgcctcttggtgttctaaactt
cattttgaggaacatcaaaaagtagttttgatactaaatgaactaaatgtatggaaagaa
gcatcaataccaggtggactacctggatggattttaaatactacattcaagaaaaactta
aaaatcgttcttttgggaggtggaaaaccatggacaatgtcgaaccaattagaaactgat
agtaaacctagagatgttgcatttttagattcatatgcattagaaaggtgggaatgtgtt
ttacattacatggttggttcacaacagcaagaaggtatatctgctgatgctgttagaatt
cttttacatgctggcttgatgaagcgagatgaagctgatggaagcccagttattacacaa
gcaggttttcaatttttgttattggaaactgcatcgcaggtgtggtattttattttacaa
tacctagatacaatagaagcaagaggacttgacctagttgaatgtcttacttttttattt
caattaaatttctcgacacttggtaaagattatagtactgaaggaatgtccgaaggtctg
tcaacatttttacaacatttaagagaatttggtttggtttatcaaagaaaacgaaaagct
ggaagattttatcccacaagattagcattaaatattgcaactggacaaaataaaccattg
tctagagatccagagaaggagggttacattgttgttgaaacaaattacagagtatatgct
tatacaaactcgaatttacaagtagctttacttggattattttgtgagatgttatatagg
tttccaaacctagttgtgtcaatattaacaagagattctgtacgtcaagctctgaaaagt
ggaattactgctgcccaaattgtaggttatttgcagcaacatgctcatggtaaaatgata
gaagcaggtcctccagttttaccaccaactatagtagatcaaattaaattatgggaaaat
gaaagaaatagattcatatttagtgaaggagttttatatagtcagtttctttctcaaact
gattttgaagtgcttagagatcatgctctttctactggagtactaatttggcaaaacgaa
aggaaacggactatagtagttacgaaagcaggtcatgacgacgtaaaaaaattttggaaa
cgatattccaaaggttccagttag
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