Brevundimonas vesicularis: CEP68_04590
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Entry
CEP68_04590 CDS
T04934
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvc
Brevundimonas vesicularis
Pathway
bvc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CEP68_04590 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvc03400
]
CEP68_04590 (ligD)
Enzymes [BR:
bvc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CEP68_04590 (ligD)
DNA repair and recombination proteins [BR:
bvc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CEP68_04590 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ASE38833
UniProt:
A0A1Z3U6C6
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All DBs
Position
complement(886778..889339)
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AA seq
853 aa
AA seq
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MRGELKTYQAKRRFGDTPEPKGAKGKRAKGGFRYLIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDTAVKRLAVEVEDHPLDYGSFEGTIPDGNYGAGTVQMWDVGTWEPQEPDLEAA
WAKGQIKMILHGERLKGKWALIRLKSDRGKPSKRNNWLLLKEKDDFAVAGEGDALAEIDA
SVTTGRSLAEIADGTTEWTASKPTGRKGPAKPTPSKAAEKDKKPPAFVPIQLCKVTDHPP
GGTGWAHEIKFDGYRIQIGVGGGRAVLRTRKGLDWSDKFSDLAADAATWPDAVIDGELCA
LDDDHMPDFGALQAAISDEKTEALVYFAFDLLSEGAEDLRKLPLSHRKARLQAYVDRIGK
TAGARLRYVEHFASTGQAVLESACRMDLEGVISKKLDAPYHAGRSSTWLKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVREKGGVRYLGRVGTGYGEAVTKTLVPALKGVAAQKSPFAGA
GAPKAAKDIHWVKPLLVAEVEHGGYTESGSLRQAAFKGLREDKTAAEVTQAPQPPTDMGE
AKKTTTTVRPAGKPGKVVVAGATLSSPDKVLWPAVGDRPAITKADLARYYEAAAERILPH
VADRPTSIIRAPEGIAGETFFQRHAMAGSNPRLKLIDVKARTPYVAAVDVGGLVAIAQSG
GLELHPWGCAPGQPEIPEQITFDLDPDEGLDFADVIAASKVVKAKIEALGLAAFVKTTGG
KGLHVVVPIKTDARSRVTWDQNKAFAKAVAEAIRAEAPDRFTTTLAKKARGGKIFIDYLR
NGRMATAVAPWSPRARPGAGIAFPLSWGQVKAGLDPAAFNLWTYAALLKKPDPWADFRAS
AVSLKSALKAMGV
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggtgaactgaagacctatcaggccaagcgccggttcggcgacacgcccgagccg
aagggcgcgaagggcaagcgcgcgaagggaggcttccgctatctgatccagcgccatgcg
gcgacgcggctgcactatgatttccgcatcgaggcggacggggtgctgaaatcctgggcc
gtgaccaaggcgccgtcgcgcgacacggcggtcaaacgtctggcggtcgaggtcgaggat
catccgctggattacggatcgttcgaaggcacgatccccgacggcaactacggcgccggc
acggtgcagatgtgggatgtcggcacctgggagccgcaggagccggacctggaggcggcc
tgggccaagggtcagatcaagatgatccttcacggcgaacggctgaagggcaaatgggcg
ctgatccggctgaagagcgatcggggcaaaccctccaaacgcaacaactggctgctgctg
aaggagaaggacgacttcgccgtggcgggagagggcgatgcgctcgccgaaatcgacgcc
tcggtgacgaccgggcggtctctggctgaaatcgcggatggaacgacggaatggacggcg
tccaagccgacggggcgtaaaggcccggccaagcccacgccctcgaaagcggcggagaag
gacaagaagccgccggccttcgtgccgatccagctgtgcaaggtgaccgaccatccaccg
ggcgggacgggctgggcgcacgagatcaaattcgacggctatcgcatccagatcggcgtg
ggcggggggcgggcggtcctgaggacccgcaagggtctggactggagcgacaagttctcg
gatctggcggcggatgcggcgacctggcccgacgccgtgatcgacggcgagctgtgcgcg
ctggacgacgatcacatgccggacttcggggcgttgcaggccgccatttcggacgagaag
acggaagccctggtctatttcgccttcgacctgttgtccgagggggcggaggatctgcgc
aagctgccgctgtcgcatcgcaaggcgcggctgcaggcctatgtggaccggatcggcaaa
acggccggggcgcggctgcgctacgtcgagcatttcgcctcgaccggccaggcggtgctg
gagagcgcctgtcgcatggatctggaaggcgtgatctccaagaaactggacgccccctat
catgccgggcggtcatcgacctggctgaagtccaaatgccgggggcgcgacgaagtggtg
atcggcggctggtcgtccgagggtggcacgcggttccgctctctgctcgtcggggtcagg
gaaaagggcggtgttcgctatctgggaagggtcgggaccggctatggcgaggccgtgacg
aagacgcttgttccggcgttaaagggcgtggcggcgcagaaatctcccttcgccggggcg
ggcgcgccaaaggcggccaaggacatccattgggtcaagccgttgctggtcgccgaggtc
gagcacggcggctataccgaatccggatcgctgcggcaggcggcgttcaaagggttgcgc
gaagacaagacggccgcagaggtcacccaggcgccgcaaccgcccacggatatgggcgaa
gccaaaaagaccacgaccacggtgcgaccggccggaaagccgggcaaggtggtcgtggcg
ggcgcgaccctctccagccctgacaaggtgttgtggcccgccgtcggcgaccggccggcg
atcaccaaggccgatctggcgcgctactacgaggcggcggccgagcggatcctgccccat
gtggcggaccggccgacctcgatcatccgggcgcccgaggggatcgccggcgagaccttc
ttccagcggcacgccatggcggggtcgaacccgcggctgaagctgatcgacgtcaaggcc
cgcaccccttatgtcgccgccgtcgatgtcggcggcctggtcgccatcgcccagtcgggc
gggctggaactgcacccctggggctgtgcgcccggccagccggaaatccccgagcagatc
accttcgacctggatccggacgaggggctggacttcgccgacgtcattgccgcgtccaag
gtcgtgaaggcgaagatcgaggcgctgggtctggccgccttcgtcaagacgaccgggggg
aagggtttgcacgtcgtcgtgccgatcaagaccgacgcccgctcgcgcgttacctgggat
cagaacaaggccttcgccaaggcggtggccgaggccatacgcgccgaggcgccagaccgg
ttcaccacgaccctggccaagaaggcgaggggcggaaagatcttcatcgactatctgcgc
aacgggcggatggcgacggcggtcgcgccctggtcgccgcgagcacggccgggcgccggg
atcgccttcccgctgtcgtgggggcaggtaaaggccgggctggaccccgccgcattcaac
ctttggacctatgcggccttgctgaagaagcccgatccctgggccgatttccgcgcctcg
gcggtcagtttgaaatcggcgctgaaagcgatgggcgtctag
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