Beta vulgaris (sugar beet): 104890064
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Entry
104890064 CDS
T03548
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104890064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvg03400
]
104890064
Enzymes [BR:
bvg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104890064
DNA repair and recombination proteins [BR:
bvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104890064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
104890064
NCBI-ProteinID:
XP_010673725
LinkDB
All DBs
Position
4:complement(2565569..2569468)
Genome browser
AA seq
1190 aa
AA seq
DB search
MGDKIKFSVLVSFFNWTSKSKSSVQKRIKFRKFLDTYCKPIDYFSSIRLILPSLDRERGS
YGLKESVLALSLLDALAISRDSEDAKKLINWRKGGTKIAGNFAGNFSSIAAEVLQRRQSS
VSGGITIREVNGLLDRLANAENRNAKTEILGEMIRKTNSQEMKWIIMIILKDLKLGISEK
SIFQEFHPDAEDLFNVTCDLRLVCEKLSDRNVRHKRQDIEVGKAVRPQLAFRVSDCRVAW
KRLHGKEVVVECKFDGDRIQIHKNGSQVNYFSRNFIDHSEYEHGMSNVIVENVLVDGCIL
DGEMLVWDKATNRFADFGSNQEIAKAAKEGLDSDRQLCYVAFDVLYVGDTSVIHQTLKER
HELLRKVVRPVKGRLEILLPNGSSNVNLNAHRGVGEPCWSIIANHVEDAERFFKETVENR
DEGVVLKDLGSKWEPGDRSGKWLKVKPDYNKAGADLDVLIIGGYYGSGRRGGEVGQFLLG
LAEKTAPGSYPRRFVSFVRVGTGLSDEELDELVTKLKPYFRKYEYPKKAAPSFYQVTNHS
KERPDVWVESPEKSVIVSITSDIRTISSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSF
LDLVHSSNGTTQRGGGADNEGLPSDKSKRARAAKTGGNRKLNLAVPSHFTQTDVSSVKGE
SQIFSNMVFHFVNVPSDHSLNSMHKLVVENGGTFSMNLNDTVTHCVGAESRGIKYEAVKR
RGCDVIHYSWVLDCCSQKQLLPLRPKHFVFLSESSRKKLQEEIDEFSDSYFWDLNVAELK
QIFCNVNKSEDAKTVDYYKRKYCPREEWGRFHGCRVYFHLLAKSHSVDWDSFLKIATRRM
KVEVSSGGGKVTDNPSQATHIVVMQVPGHKLIFDTLFQSFPGDQKRILHSKRLHVVGSQW
LEDCLKEEQKLSEVAYNLKPATLEELPSEEENGEDDKDHKKCPASSFREEKPTTLAPKIV
PLIREGKGKRGRPLGTSTRKGKTIVSKPPRTKRARVGSRPAKLQEIASDDDSSEQEETYA
PVKASPELKMHDRVFQDIAIDAIDDKTSEHETSTLGKSGLESENIGSSSRYELSKKNEEK
KEEERKPELDEIGRRCLDNPGIVACSKPEKDTTDSTSGKLEVMLDPVQAMLLDMLPSLRR
KSQATNAVIEDRNLQSTQSQEGSSVEPTQVEPVKKKKVSYRELVKQLLKD
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacaagatcaagttcagcgtactagtaagtttcttcaactggacatcaaaatca
aagtcatccgttcaaaaacgcataaaattccgcaaattcctcgacacttactgcaaacca
atcgactatttctcatcaattcgcctcattttaccttcattagatcgcgaacgaggttct
tatggcctcaaagaatcagtcctcgctctctctctcctcgacgctctcgcaatttctcgc
gattccgaagacgccaaaaaactcatcaattggcgtaaaggcggcaccaaaatcgccgga
aatttcgccggaaacttctcttcaatcgccgccgaagttctccaacgccgacaatcttcc
gtctccggcggaattacgattcgcgaagtaaacggacttctcgatcgtctcgcgaacgcc
gagaatcggaatgcgaaaactgaaattctaggcgaaatgatacgaaagacgaattcgcaa
gagatgaagtggattatcatgataatattgaaggatttgaagttagggattagtgagaag
agtatttttcaggaatttcatcctgatgctgaggatttgttcaatgtaacatgtgattta
cggcttgtttgtgagaaattgagtgatcggaatgttaggcataagagacaagacattgag
gttggaaaagctgtgagacctcagcttgcgtttagggtttcagattgtagagttgcttgg
aagaggcttcatggaaaggaggttgtagttgagtgtaaattcgatggtgatcgaattcaa
attcataagaatggctctcaggtaaactatttttctcgaaattttattgatcatagtgaa
tatgaacatggtatgtcaaatgttattgtagagaatgtgttagttgatggttgtattctt
gatggagaaatgttggtttgggataaagctactaatcgttttgctgatttcgggtcgaat
caagagattgctaaggctgctaaggaaggtttagatagtgacagacaattgtgttatgtt
gcttttgatgtgctttatgttggtgatactagtgtgattcatcagacattgaaggagaga
catgaacttcttaggaaggttgtgagacctgtaaagggtcgtttggagattttgttgccg
aatggtagtagtaatgttaatctcaatgctcatcgaggtgtaggggagccgtgttggtcg
attatagctaaccatgtggaagatgccgagaggttttttaaggagacagttgagaatagg
gatgagggagttgtgttgaaagaccttggttcgaaatgggaaccgggagataggagtggg
aagtggcttaaggtgaagcctgattacaacaaggcaggtgctgatttggatgttctgatc
ataggagggtattatggttctggtcgtcgaggaggggaggtgggtcagtttttgttgggc
ctcgcggagaagactgctcctggtagctacccaaggaggttcgtttcttttgttagagtg
ggtacaggactttctgatgaggagcttgatgaactggtgaccaaattgaagccgtatttt
aggaaatacgaatatccaaagaaggcagcaccaagtttttaccaagttactaaccactct
aaggaaaggccagatgtttgggttgagagccctgagaagtctgtgattgtctcaattact
agtgatattcgtactataagttccgaggtgtttgctgcaccttacagcttaaggtttcct
cggattgaccgggtgagatatgacaagccttggcatgagtgtcttgatgttcagtctttc
ctggatcttgtacattcgagtaatggaacaacacaaagaggaggaggtgcagataatgaa
gggttgccatctgataagtccaagcgtgcaagagctgcgaaaactggagggaataggaaa
cttaatcttgcagttccttcccatttcactcagactgatgtttctagtgtaaagggggaa
tcacaaatattttcaaatatggtttttcactttgtcaatgtgccttctgatcattctctg
aattccatgcacaagttagttgttgagaatggtggaactttctccatgaatctgaacgac
acagttactcactgtgttggggcagagagtcgagggatcaagtatgaagcagtaaagagg
cgtggatgtgatgttatccactactcgtgggttcttgattgttgctcacagaagcagctt
cttcccttgaggcccaagcattttgtcttcctttcagaatcttcaagaaaaaagttacag
gaggaaattgatgaattctccgactcctacttctgggaccttaatgttgctgagctgaag
cagatcttttgcaatgtgaataagtcagaagatgcaaaaactgttgactactacaagagg
aagtactgtccacgcgaagaatggggtcgtttccatggctgccgcgtatatttccatcta
ttggcaaagtcccattctgttgactgggacagcttcttgaaaatagccacgaggaggatg
aaagtggaagtttcttcaggtggtgggaaagttaccgacaacccttctcaagcaacccat
atagttgtcatgcaagttccggggcataagctgattttcgataccttgtttcagagtttc
ccaggggaccagaaacgcatcttacatagtaaaagacttcatgttgttggatcccaatgg
ttggaggattgcctgaaggaggagcagaaattgtccgaagtggcatacaatctgaagcca
gctaccttagaagaattgccttctgaagaagagaatggtgaagatgataaggatcataaa
aaatgcccagcctcctcgtttcgtgaagaaaagccaacgacacttgctccaaagatcgtt
ccccttattagggaaggcaaaggaaagcgaggaaggcctcttggaactagcactaggaaa
ggcaaaaccattgtcagcaaacctccaagaacaaaaagggccagagtcggaagtaggccg
gctaaattacaagaaattgcctctgatgatgattctagcgagcaagaagaaacttatgca
ccagtgaaagcaagccctgaacttaaaatgcatgaccgtgttttccaggacattgctatt
gatgctattgacgataagactagcgagcatgagaccagtacactgggaaaatctggttta
gaatctgagaatattggttcaagttcaagatatgaattatcgaaaaagaacgaagagaaa
aaggaagaagaacgcaagcctgaactcgatgagataggacgtcgctgcttagacaatcct
ggcattgttgcttgcagtaaacctgagaaagacacgacggactccacatcagggaaattg
gaggtcatgcttgatccagttcaagcaatgttgctagacatgctcccaagtcttaggagg
aaatctcaagctacaaatgctgttattgaagacagaaatttacaatcaacacaatcacaa
gagggatcgtccgtagaaccaacccaagtagaaccggtgaagaagaagaaagttagctat
agggaacttgtaaagcagttactcaaggattga
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integrated database retrieval system
