Beta vulgaris (sugar beet): 104898484
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Entry
104898484 CDS
T03548
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104898484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvg03021
]
104898484
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104898484
Transcription machinery [BR:
bvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104898484
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104898484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
104898484
NCBI-ProteinID:
XP_010683870
LinkDB
All DBs
Position
7:complement(5171976..5180657)
Genome browser
AA seq
1027 aa
AA seq
DB search
MESSRRPPFDRSRELIAKKPRLNEDQTLRQFQQPMQRSAIGSGSTRFRANERDKEPDDPV
RGALQQFQQHQELVNQYKTALAELTFNSKPIITNLSIIAGENLQAAKAIAATICSNILEV
PTEQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFCKAYRQVDPALHSNMRHLFGTWKGV
FPPHSLQIIEKELGFQVAANGTPSGTTTSKSDSQSPRQPHSIHVNPKYLEARQRLQQSSK
IKGTDIGLADVGSSDDVERPERTAGAGIERPWMDPSTKMQNTRLQREPLRESGLQKQVGA
IYGDYEFPSGLSRPINTSGGKPSGQRWLGAGREGEESVSGERNGYDIKRGIPKYAAARPA
SSSIPSVQNQPSAGEMSGSWKHSEEEEYMWDDLGTKAMDPGATAVIKKEIWSEDLEKVEP
GGYHPKWQSRTEVRSNFEREHSADTLSSELKEQVPFGHSRSSQWKMQESHQGDSTSSLLQ
QAGTHSVIGPSSAKVSSFGLPTTVSASAGSMARHPSLGQSVMNQRPPSPSLSKRDPRQNL
AEKDHLRSYPLVRSDPRTASFSGQLNTGVRDKSIQDSAPSRHQNISVQKMQAQTLQKTPS
PTPFQQRHHVPSSEQVSNSKAELSDIVQKAQKLLGSSSLKKGSSSDSMSPAAVNMQGQAN
VSSLLAAVMKSGLLSGSSLSGQSKIQPPDSLTPQAALISSKDGSTSSHPRDSTVAVSQNM
VKKPLLVPPVSSSPMSSTLAQTSNAAAAKSNPLSILSTLISKGLISAPKTEAPAAVPLKS
EDLLQEKSPTVVTVTKDTCPSVSKVPAALSESSSEKISSLELDRKKSDSVQSTKEEAEDL
IGFEFRPRVLRDLHPAVIDRLSDNMPHKCTACGVEFKLQEGLARHSKWHAFKNSIQNRLN
KPSRRWYSKPSDWIAGKAGFPFGYNSTSLVEGFSRVREENEKLVPADESQCVCLLCGELF
EDFYSQERDEWMFKGAVYLCTPSGSTEEGGSCNESGSQKLIVHANCMSGDSGFGLASIRG
IKVEKVT
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggagagttctcgtagaccaccatttgatagatcaagagaattgattgcgaagaagccg
cgattaaatgaagaccagaccctccggcaatttcaacaaccgatgcaaagatcggcgatt
ggttcgggttcgactcgatttcgagcgaatgagagagataaagaaccggacgatccggtt
cgtggggctttacagcagtttcagcagcatcaggagctggttaatcagtataagactgct
ttagctgagctaacgtttaattcgaagcctattattacaaatttgtcgattatagcgggc
gagaatttgcaggctgccaaggccattgcggccaccatttgttctaacattcttgaggtt
cctactgaacagaagcttccctcactttatctactggatagtattgtgaagaatattggt
agagattacatcaagtactttgcaacaagattacctgaggtattttgcaaggcatacagg
caagtggatcctgcattacattctaatatgagacatttatttgggacttggaaaggtgtt
ttccctcctcattcgctgcaaattattgagaaggaactcggattccaggtagctgccaat
ggcacaccatccggaactaccacttctaagtctgattcacagtctccgcgtcagccacat
agtattcatgtgaatcccaagtatttggaagcaagacagcgtcttcagcagtctagtaag
ataaaaggaacagatattggcctcgcagatgttggatcttctgacgatgtggagaggcca
gagagaactgctggtgcaggaattgaaaggccttggatggatccttcaacaaagatgcag
aatacacgccttcaaagagaaccacttagagaatccggtcttcaaaagcaggttggtgca
atctatggagattacgaattcccatctggtctttcaagacctataaacacatcaggtggt
aaacctagtggacagagatggcttggtgctggcagagagggggaagagtcggtttctggt
gaaaggaatggatatgatattaagcgtgggattccgaagtatgcagctgccaggccagca
agtagtagtattccgtcagtgcagaatcagccaagtgctggtgagatgtctgggagctgg
aaacactccgaagaggaggagtacatgtgggatgacttgggcaccaaggcaatggatcct
ggtgctacagctgtcataaagaaagaaatttggtctgaggatctcgagaaagtggaacca
ggtgggtaccatcctaaatggcaaagccggactgaagtcaggtccaattttgagagagaa
cattccgccgatactctttcttctgaactgaaagaacaagtgccatttggacactcaagg
tcttcccagtggaagatgcaagaatctcaccagggcgatagtacaagttctttgttacag
caagcgggaacccactccgtgattggtccatcttcagctaaagtctctagttttggtctc
cctactactgtgtcagcatctgcaggatctatggcgcgtcatccatctcttgggcaatct
gtgatgaatcagcgtccaccttctccttctttatctaaaagggatcctcgtcaaaatctt
gctgagaaagatcatttgagatcttatcccttggttcgatctgatcccagaacagcttcg
ttctcagggcagttaaacacaggtgttcgtgataaaagtattcaggactctgcacccagt
cggcatcagaatattagtgtgcaaaaaatgcaagcacaaactctgcagaaaacaccttct
cctacaccttttcaacaaaggcatcatgttccatcttctgaacaggtgtcaaattcaaag
gctgagctttctgatatagttcagaaagctcagaagctgcttggttcctcctcattgaag
aaaggttcctcatcagatagtatgagtccagctgctgttaatatgcaagggcaggcaaat
gtgagtagtttactggctgctgtaatgaaaagtgggttgctttctggtagctctctttct
gggcagagtaagattcaacctccggattctctcactccacaagccgctcttattagttcc
aaggatggttccacatcttcacatcctcgtgattctactgttgctgtctctcagaatatg
gtaaaaaagcctttgctggtgcctccagtctcttcatctcctatgagtagtacattagca
caaacttcgaatgctgcagctgccaagtcaaaccctctttctattttaagcacattgata
tcaaagggattaatatctgcaccaaaaactgaagcacctgctgctgttcctctgaagtct
gaggacctgcttcaagaaaaaagtcctactgttgttactgtaactaaggatacatgtcca
tcagtttccaaagttcctgcagctctatctgaatcttcttctgagaagatttcatccttg
gaacttgacagaaagaaatctgactcagttcaaagcacaaaagaagaggctgaagatctc
ataggatttgaatttaggccccgtgtgctccgggatctgcatcctgctgtaattgacaga
ctctctgataacatgccacacaagtgcactgcatgtggtgtcgaatttaaactgcaagaa
gggcttgctagacattctaagtggcatgcctttaaaaattcgatacaaaatcgcttgaat
aagccgtcaaggagatggtattcaaaaccttctgactggattgctgggaaggctggattt
ccatttggttacaactccactagtctcgtggaagggttcagcagggtcagagaagaaaat
gagaaattggttcctgcagatgaaagtcaatgcgtgtgtctcttatgtggtgagcttttt
gaagatttctacagtcaagagagggatgagtggatgttcaaaggagcagtttacttgtgt
accccatctggaagcactgaggaaggaggatcttgtaatgagagtggttcgcaaaaattg
attgtgcatgccaactgtatgtcaggtgattcaggttttggcttggcatctatcaggggt
attaaagtggaaaaggttacctaa
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