Beta vulgaris (sugar beet): 104906630
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Entry
104906630 CDS
T03548
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03013
Nucleocytoplasmic transport
bvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104906630
03015 mRNA surveillance pathway
104906630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104906630
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104906630
mRNA cycle factors
P-body specific factors
104906630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
104906630
NCBI-ProteinID:
XP_010693713
LinkDB
All DBs
Position
2:complement(4348840..4361127)
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AA seq
1176 aa
AA seq
DB search
MQEAVVRAEESKKSVEAMMSLRQSNLKPERPDPAFLRTLDSSIKRNTAVIKKLKQISEDQ
REGLIDELRGVNLSKFVTEAVAAICDAKLKTSDIQAAVQICSLLHQRYPDFSSSLSQGLS
KVFIPGKATEDLETDRNLKAMKKRSSLKLLLELYFAGVIEDSSIFVNIIKDLTSLEHLKD
RDATQTNLSLLATFARQGRVFTGLPLSGSEANDEFFKGLNVTAEQKKIFKKAFHVYYDAV
AEVLHTEHTSLRQMEHENAKILNAKGELSDDNATLYEKLRKSYDHLYRGVSSLAEALDMQ
PPVMPEDGHTTRVTSGDDSASSAAGKDSSAVEAVWDDEDTRTFYECLPDLRAFVPAVLLG
EADSKTSEQHAKMPDQSPDAATELDQLNLATEDTVESSADSGALPDGKVTEKGKEKEGKG
KDKEEKEKNKEVDKERGKEKDADKKGDKDKEKHKGPDGTNLETLLQRLPGSVSRDLIDQL
TVEFCYLNSKTNRKKLVKALFNVPRTSLELLPYYSRMVATLSTCMKDISSMLLQMLEEEF
NFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLAFSCLKACLDEFTHHNIDVACNLLE
TCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERPARITKIR
PPMHQYIRKLLFSDLDKSSIELVLRQLRKLPWSECEPYLLKCFLKVHRGKYGQIHLIASL
TAGLSRYHDDFAVAVVDEVLEEIRLGLELNDYTMQQRRLAHMRFLGELYNYEHVDSSVIF
ETLYLILVFGHGTAEQDSLDPPEDCYRIRMVITLLETCGHYFDRGSSRRKLDRFLIHFQR
YTLSKGVLPLDIEFDLQDIFADLRPNMSRYSSIEEVNAALAELEEHEGKVSGERHPEIEK
RSNNISRSNLGNGQRLANGVDENGGAHEDTTRDSESDSGSGSIGDGGHDDDDDMDDENHD
PGSESEDDDDDEVGPASDEDGEFRARKKASALDPMEEAEFDREFKALMQESLDSRKLELR
SRPTLDMMIPMSILEGSSKDHHGRGLEGESGEETLDEENGGNREVRVKVLVKRGHKQQTK
QMFIPQDCSLVRSTKQKEAAELEEKQDIKRLVLEYNDREEEELSGVGNQIMGWTQSGIGR
IPSRGSAWDGSGGRGSGARHRYHHHPGGGHYYSRRR
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagctgttgttcgtgctgaagaatctaagaaatcggtagaggcgatgatgtct
cttcgtcaaagtaatttgaagcctgaaaggcctgatcccgctttcttgaggacgctggat
tctagcataaaacgcaacactgcggttattaaaaagcttaaacagataagtgaagatcaa
agagaaggtttgatagatgagttgcgaggtgtcaacctaagtaagtttgtgactgaggca
gtggcagctatatgtgatgccaagctgaagacttctgatatacaggctgctgtccagatt
tgctccttgcttcaccaaagatacccagatttttcatcaagcctgagccagggtttatca
aaagtgttcattcccgggaaagcaacagaagacttagagacagatagaaacttaaaggcg
atgaagaagcgtagctctttaaagctccttctggaattgtactttgctggcgtcatagaa
gacagcagcatctttgttaacatcatcaaagatcttactagtctggaacacctaaaggac
cgagatgctactcagactaatctttcactgcttgctacatttgctcggcaaggaagagtg
ttcacggggcttccactatctggatcagaagctaatgacgagttcttcaagggccttaat
gttactgctgaacagaagaaaatcttcaagaaggcatttcatgtgtattatgatgctgtt
gctgaagttctgcatactgagcatacttctcttcggcagatggaacatgagaatgcaaag
atattgaacgctaaaggggaactaagtgatgataatgcaactttatatgagaagttgcgg
aaatcttatgaccatttgtaccggggtgtctcatctttagctgaagcccttgatatgcaa
cccccagtgatgccggaggatggtcatacgacaagggtaactagtggggatgattctgct
tcttctgcggctggaaaggattcttctgctgttgaagcagtgtgggacgacgaagataca
agaactttttacgagtgtttgcctgatcttagagcatttgttcctgcagttttattgggt
gaagctgattccaagaccagtgagcaacatgcaaagatgccagaccaatcacctgatgct
gccacagaacttgatcagttaaacttagctactgaagatactgttgagtcctctgcagac
tctggagctttgccggatggaaaagtgactgagaaggggaaggaaaaagaaggaaaagga
aaagataaagaggagaaagaaaagaataaagaagttgacaaagaaagagggaaagaaaaa
gatgcagacaagaaaggagataaagacaaggaaaaacataaaggtcctgatggtacaaat
ttggagactttgttacagaggcttccaggttccgtcagtcgtgaccttattgatcagtta
actgtggaattttgctatttgaactcgaagactaatcggaaaaagctcgtgaaggcatta
tttaatgtccccagaacttccctagagttgcttccatattattctcgcatggttgccaca
ttgtctacttgtatgaaggatatctcgtcaatgctccttcagatgttggaggaggagttc
aatttcttgataaacaagaaggatcaaatgaacattgaaacaaagatcaggaatatcaga
ttcattggggaactttgtaaatttaagattgcacctgctggccttgcttttagctgctta
aaggcttgtttagatgaattcacccatcataacattgatgtggcttgcaatcttctggag
acatgtgggcggttcttatatcgttctcctgaaaccacaatacgcatggctaacatgttg
gagatacttatgcggctgaaaaatgtgaagaatttggatcctcgtcatagcactcttgtt
gaaaatgcatattatttatgcaaacccccggaaagacctgcccgaataactaaaattcgc
cctcctatgcatcagtatattagaaaattgctgttctcagatctcgacaagtcctcgatt
gagctggttcttagacaacttcggaaattgccatggagtgaatgcgaaccatatctattg
aaatgctttttgaaggttcatcgtggaaaatatgggcaaattcatcttattgcatcactg
actgctggactcagtcgctaccatgatgattttgctgttgctgttgttgatgaggttttg
gaggaaatcagattgggactagagttgaatgactacaccatgcagcaacgacgccttgca
cacatgcgtttcttaggggagctatataactacgaacatgtggactcatctgttatcttt
gagacactatacttgattcttgtttttggccatggtacagctgagcaagattccctggat
cctccggaagattgttaccgcatcaggatggtaataactcttctagagacctgtgggcac
tactttgatcgaggctcgtcccgaaggaaacttgatcgttttttgatacatttccagagg
tatacactaagcaagggtgtactaccacttgatattgagtttgacttacaggatatattt
gctgatctgcgacccaatatgtcgcgatatagctcaattgaggaagtgaatgctgccctt
gcggaactggaggagcatgaaggcaaggtaagtggtgaaaggcatcctgaaattgagaag
cgctcaaacaatatcagtcgaagcaatcttggtaatggtcaacgtcttgcaaatggtgtt
gatgaaaatggtggtgcgcatgaggatacaacacgggatagtgaatcagactcggggagt
ggctcaattggtgatgggggtcatgatgatgatgatgatatggatgacgagaatcatgac
ccagggagtgagagtgaggatgatgatgatgatgaggtgggacctgcttctgatgaagat
ggtgaatttcgcgccagaaagaaggcatctgctctggatcctatggaagaagctgaattt
gaccgggaatttaaggcacttatgcaggagagcttggattcccgtaaattggagctgcgg
tcccgcccaacacttgatatgatgataccaatgagcatcttggagggttcttccaaggac
catcatggaagagggcttgaaggggaaagtggtgaggaaacattggatgaagagaatgga
ggaaaccgggaggtccgtgtaaaagttcttgtgaagcgtgggcacaaacaacagacaaag
caaatgttcattcctcaagattgctctctcgttcggagcacgaagcagaaagaagctgct
gagcttgaggagaaacaggacataaagcgattggttttggagtacaatgacagagaagaa
gaagagcttagtggggtcggtaaccaaataatgggttggacacaatcaggaataggccga
atacctagtcgcggtagcgcttgggatggaagtggtgggagaggttctggcgcacgtcat
cggtaccaccatcatccaggtggtgggcactattatagtagaagaagatga
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