Heyndrickxia vini: I5776_09670
Help
Entry
I5776_09670 CDS
T07201
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvj
Heyndrickxia vini
Pathway
bvj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I5776_09670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvj03400
]
I5776_09670
Enzymes [BR:
bvj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I5776_09670
DNA repair and recombination proteins [BR:
bvj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I5776_09670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QQZ11128
LinkDB
All DBs
Position
complement(1925955..1927787)
Genome browser
AA seq
610 aa
AA seq
DB search
MKPMLPTLKTDPPLDSNWIYEIKYDGFRAILEWNHNVMHLWSRNEKDLLPQFPEIETYLM
SINERVKDFLPLILDGEIVVLENSGKANFGELQIRGRLKSEDKISEYAKKRQCKLLVFDL
LKIKGQSLISQSLAERKYQLNNFINRMELPTNPTNASQNLIQQILSEKDFNKVWKRVKSF
DGEGIVAKTIDSKWEEGKRTETWVKLKNWKKVSCFIIGLDSSNGYYHIGVYKDKIVYPLG
LFLFSIDADKKRALNKVIKENAYASNHGLLNIHPSICVDIYYLEWFENKLREPHFHAFRF
DLSPEECTYEQFLIDEAQIPIDISITHPDKPLWEKDAISKLDFIRYMRKISSFMLPFLQN
RTLTVIRYPHGIFGEPFYQKNCPDYAPGFIQTHLKDGIHYIVCNDLKTLMWLANQLSIEF
HIPFHTISDRYVSEIVFDLDPPSRNEFHLAVKASQMMKKIFDQLELVSFIKTSGNKGLQV
YIPLPEKQFSWDDTRLFTEFIANYLVTEKPDLFTIERLKKNRKGRLYVDFVQHAEGKTII
APYSMRGHEDALIATPLFWNEVNEQLHPEQFTMKAVLHRMNKFSCPFENFFSIKNNQPFE
PILNFLKQSK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttccgacactgaaaaccgatcctcctttagatagtaattggatatac
gaaattaaatatgatggatttcgtgcgatattagaatggaatcacaatgttatgcatttg
tggagtagaaatgaaaaagacctgcttccacaatttccggaaattgaaacgtacttaatg
agcataaatgaacgtgtaaaggattttttaccattaatattagatggcgaaatagtagtg
ttagaaaattccgggaaagcaaattttggagaattacaaataagaggacgattgaaatca
gaggataaaatttctgaatatgcgaaaaaacgccaatgtaaattattagtatttgatttg
ttaaaaattaaagggcaatcactaattagccaatcattagcggaaaggaaatatcagcta
aataacttcattaacaggatggaattacccacgaatcctacaaatgcgagccaaaattta
attcaacaaattttgagtgaaaaggattttaacaaagtatggaagcgggttaaatccttt
gatggggaaggcattgtggcgaaaacgattgacagcaaatgggaggaagggaaacgaact
gaaacatgggttaaacttaaaaattggaaaaaagtatcatgctttataataggcttggat
tcttctaacggatattatcatattggtgtatacaaggataagattgtttatcctttagga
ttgtttttatttagcattgatgctgataaaaaacgagctttaaacaaagttattaaagag
aatgcatatgccagtaatcatggactgctaaatattcatccatctatttgtgttgatata
tattacctggaatggtttgaaaataaactaagagagccacattttcatgcttttcgattt
gatttatcccctgaagaatgtacctatgaacaatttttaatagacgaagcacaaattcca
atagatatatcaattactcatccggacaaaccattatgggaaaaagatgcgatttccaag
ttggattttattcgctatatgagaaagatttcttcatttatgcttccctttttacaaaat
cgaacattaactgtcatccgatacccgcatggaatatttggagagcccttttatcaaaaa
aattgtcctgattatgcacccggttttattcaaacacatctaaaagacggaatacactat
attgtttgcaatgatctaaaaacgctaatgtggctcgctaatcaattatccattgaattc
catataccttttcatactatttcagatcgatatgtaagtgagattgtgtttgatcttgat
ccgccgtcgcgcaatgaattccacttagcagtaaaagcaagtcaaatgatgaaaaaaata
tttgaccagttggaattagttagtttcataaaaacatcaggaaataaaggcctacaagtt
tatatccctttacctgaaaaacaatttagctgggatgatacacgcttatttactgaattt
attgcaaactaccttgttacggaaaaaccagacttatttacaatcgaacgacttaaaaaa
aatcgaaaaggcagactgtatgtcgattttgtacaacatgcggaaggaaaaacaattatt
gcgccttattcaatgcgtggacatgaagatgcattaattgcaacaccgttgttttggaac
gaagtgaatgagcaacttcatccggaacaatttacaatgaaagcagttttacatcgaatg
aataaattctcttgcccgtttgaaaacttcttttcgataaagaataatcagccatttgaa
ccaattttaaactttttgaaacaaagcaaatga
DBGET
integrated database retrieval system
