Rossellomorea vietnamensis: FHE72_13150
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Entry
FHE72_13150 CDS
T07200
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvq
Rossellomorea vietnamensis
Pathway
bvq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FHE72_13150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvq03400
]
FHE72_13150
Enzymes [BR:
bvq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FHE72_13150
DNA repair and recombination proteins [BR:
bvq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FHE72_13150
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QHE61855
UniProt:
A0A6I6UG34
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Position
2566540..2568402
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AA seq
620 aa
AA seq
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MKPMLPTLRHELPSGHDWLYEVKYDGFRGILSVQSSDQISLQSRNGKELLSHFPEIKKHI
HQLLEEHTLPLPLVLDGEVALLRSSFSTEFQELQVRGRMRNGQKILQAAASRPVTFLAFD
LLQSEKKSYIQEPYLRRKEKLKEVFSRLQLPLEPAPSHPSTLQMVPYYRNLERVWELVLN
DEGEGVVAKRSQSKWDAGKRSADWIKCKNWKHCQCFITALDDANDYFHIGVYHNGQIMPI
GLFHFGLSAEEKRTVKTTIKQNSTEKNDSLYSIDPAITVEIVYLNWQDGKLREPHFKQFL
FTTPPEACTLEQFMLDEASLPKEVDITHPEKTLFREVSITKLDYIRFLRKMSVVILPFLK
NRPLTCIRFPHGVFGESFYQKNTPDYSPAFVETYKEDHIHYTLCNNLETLIWLGNQLALE
FHVPFQKAGEEFVNEVVFDLDPPSRDHFSLAVKAATIMKGLFDGLNLKSFVKTSGNKGLQ
VYIPLPPGYTWEETGLFTEFIAHYLVSNNPGDFTTERLKKNRKGRLYVDYIQHGEGKTII
APYSLRGNEEALVATPLWWDEVNENLNPEMFTINAVLRRFQENGCPFTGFDQVKASQPFD
KVIDFLKKKANSNKKGTPKS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgctccctacattacgtcatgaacttccttctggtcatgactggctatat
gaggtgaaatatgatggcttccgtggcattttatctgttcaatcctctgatcaaatcagc
cttcaaagccggaatgggaaggaacttctgagtcacttccctgagataaagaagcatatc
caccaattacttgaagagcatacacttcccctccctctcgttttagatggagaggttgca
ttgttacgatcctcgttcagcacggagttccaggaactccaggtcagggggagaatgcgg
aatggtcaaaagatcctacaggcagctgccagtagacctgttaccttccttgcatttgat
ttacttcagtctgagaagaaatcatatatccaggaaccctatcttaggagaaaagaaaaa
ctgaaagaggtcttctcccgccttcaattaccgttggaacctgccccgtctcacccatcg
actttgcagatggtcccttattaccgaaaccttgagagagtatgggagctcgttctaaat
gatgaaggggaaggggttgtcgcgaagaggagccagagtaaatgggatgcggggaaacgg
agtgctgactggatcaaatgtaagaactggaaacattgccaatgcttcatcaccgcactg
gatgatgcgaatgattatttccatatcggcgtttaccataacggacagatcatgccgatt
ggcttatttcatttcgggctttctgcggaggaaaaaagaacggtgaaaacgacaattaag
caaaatagtacagaaaaaaacgattctctttattccatagatccggccatcaccgtagaa
atagtctatctgaattggcaggacggaaagcttcgtgaaccccattttaaacaattcctt
ttcaccactccaccggaagcgtgcacacttgagcaatttatgttggacgaagcctccctt
ccaaaagaggttgacatcactcacccggaaaagacattgtttcgggaggtttccatcacg
aaactggattatatccgtttcctccgaaagatgtctgtggtgattttaccctttttaaag
aacagaccattaacctgcattcgatttccccacggggttttcggtgaatccttttaccaa
aaaaacactcctgattattctcctgcttttgttgaaacatacaaagaggatcacattcac
tacactctttgcaataaccttgaaacgttgatatggcttggaaaccaattggcactagaa
tttcatgtcccctttcagaaagcaggggaagaattcgtcaatgaggtggttttcgactta
gatccaccaagccgcgatcatttttcactggccgttaaagcggccaccatcatgaaagga
ttatttgacgggctgaacctcaaaagctttgtcaaaacatcgggaaataaggggcttcaa
gtgtatatccccctccctccaggatatacgtgggaagaaacagggttatttacagaattc
attgctcattaccttgtaagcaataatccgggagatttcacgaccgagcggttaaagaag
aaccgcaaaggtagactgtatgtggattatatacaacacggtgaaggcaaaaccatcatc
gccccctattcattgagagggaatgaagaggctttggtcgccactccactttggtgggat
gaagtgaatgaaaatctcaatcctgaaatgttcaccattaacgcagtcttaagaagattt
caggagaatggatgtccttttacgggttttgaccaggtgaaagcctctcagccatttgac
aaagtcattgattttttgaaaaagaaggcaaactcaaataaaaagggtaccccgaaatca
tag
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