Bosea vaviloviae: BHK69_13460
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Entry
BHK69_13460 CDS
T04483
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvv
Bosea vaviloviae
Pathway
bvv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BHK69_13460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvv03400
]
BHK69_13460
Enzymes [BR:
bvv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BHK69_13460
DNA repair and recombination proteins [BR:
bvv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BHK69_13460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AOO81338
UniProt:
A0A1D7U1T7
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All DBs
Position
2926338..2928977
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AA seq
879 aa
AA seq
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MAGKLQAYRAKRDFEKTREPGDDAPVASSDRLRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLAYGDFEGTIPKGEYGGGTVQLWDRGFWKPEGKLSAHR
QFEKGDLKFTLEGDRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDEHAIDGNGEAVLKTDT
SVASGRTMAAIAAGKGRSPKPFLLAESVLAPDAEWDSRKRLAAKRLAAKPRRGEATSPRK
REARAAEMPSFIAPQLSRSVERPANGDDWVHEIKFDGYRIQMRIEAGKVTLKTRKGLDWT
AKFRAIAKAAEGFPNAIIDGEIVAFDSRGSPDFAALQAAISEGKTQDLVFFAFDMLFDAE
IDLRKQTLRERKEQLKAYLDAHADGVVLRYVEHFETGGDAVLRSACKLSLEGIVSKAVDA
PYVSGRSDTWTKAKCRAGHEVVIGGWSTTAGRFRSLLVGVNRGSHFVYIGRVGTGYSASK
VERLLPRLKAVAAKTSPFTGAGAPKREPGVTWLKPELVAEIEFAGWTGDGMVRQAAFKGL
REDKPAEEVETELPADPEETATPEPRPARSRDRGGKVDVMGVGISHPDKALWPNAGDDRP
VSKQDLAEYFAAVGEWMLPHIKGRPCSLVRAPDGIDGEMFFQRHAGMGTSNLFELVRVFG
DKKPYLQIDRIEALAAAAQIGGIELHPWNCAPGDPEVPGRLVFDLDPGPGVSFGDVIDAA
KQMRERLEALGLTSFCKTTGGKGLHVVAPLAPGKRSKVDWPAAKDFARRVCADLASEEPS
RYVVNMAKRLRNGRIFLDYLRNDRMATAVAPLSPRARPGAHASMPLTWSQVKSGLDPSRF
TVRTLPGLLKKTGAWEGYDDAAGSIADAIKKLGKRAEAA
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
ttggcgggcaagctgcaggcatatcgcgccaagcgcgattttgagaagaccagggagccc
ggcgatgacgccccggtggcctcgtcggatcgcttgcgcttcgtcattcaaaaacatgac
gccaccaggctgcactatgacctgcgtctcgagctcgatggcgtcttcaaatcctgggcg
gtgacgaagggtccatcgctcgatcctcacgacaagcgccttgctgtcgaagtcgaagat
caccctctcgcctatggcgacttcgagggaacgatccccaagggcgaatatggcgggggc
accgtccagctctgggatcgtggcttctggaaacctgaggggaaactcagtgcccacagg
caattcgagaaaggcgacctgaaattcacgctcgaaggcgacaggctccacggcagcttc
gtcctcgtccgaatgcgaaacgatcgggacggcggcaagcggaccaattggctcctcatc
aagcatcgcgacgagcatgcgattgatggcaatggcgaagcggttctgaaaaccgacact
tcggtggcatctggccggacgatggctgcgatagcggcgggtaaaggacgctctcccaag
ccctttttgctcgccgaaagcgttctggctccggatgcggaatgggacagccggaaaagg
ctcgcggccaaaagactcgcagctaagccgaggcgcggtgaggcgacatcgcctcgcaaa
cgcgaagcgcgcgccgccgagatgccgtccttcatcgcgccgcaactctccagaagcgtc
gagcgcccagccaatggagacgactgggtccacgagatcaaattcgacggttaccgcatc
cagatgcggatcgaagccggcaaggtcacgctgaagacgcgcaaaggcctcgactggacc
gcgaagttccgcgcgatcgcgaaggccgccgaggggtttccgaacgccatcatcgatggc
gagatcgtcgcatttgatagccggggctcacctgattttgcggcgcttcaagccgcgatt
tccgaaggcaagacgcaggatctcgtctttttcgctttcgacatgctcttcgacgccgag
atcgatctgcgcaagcagacgctccgggagcgaaaagagcagctgaaggcctatctcgac
gcacacgccgacggtgtcgttcttcgctatgtcgagcatttcgagaccggcggcgatgcc
gtgctgaggtcggcctgtaaattgtcgctggagggcatcgtctcgaaggccgtcgatgcg
ccctatgtctcgggccgcagcgacacctggaccaaggccaaatgtcgcgccgggcacgag
gtcgtcatcggcggctggtcgaccacggccggcaggttcagatcattgctcgtcggcgtc
aatcgcggctcccatttcgtctatatcggccgggtcggcaccggctacagcgcctccaag
gtcgaacgattgctgccgcgattgaaggcggtcgccgcgaagacgtcacccttcacgggc
gccggagcgccgaaacgcgagcctggcgtgacctggctgaagcccgagctcgtcgccgag
atcgagttcgccggctggaccggcgacggcatggtgcgacaggcggccttcaagggactg
cgcgaggacaagcccgccgaagaggtcgaaaccgaacttccagccgatccggaggagacc
gctacgcctgagcctcgtcccgcccgctctcgcgaccgcggcggcaaggtcgatgtcatg
ggcgtcggcatcagccatcccgacaaggctttgtggccaaatgcgggggatgatcgcccc
gtttcgaagcaggatctggccgagtattttgcggcggtaggcgagtggatgttgccgcac
atcaaggggcgcccctgctcgctcgtacgcgcgcccgacgggatcgacggcgagatgttc
ttccagcgccatgccggcatgggcacgtcgaacctgttcgaactcgtccgcgtcttcggc
gacaagaagccctatcttcagatcgatcggatcgaggccctggccgctgcagcccagatc
ggaggcatcgagcttcacccctggaactgcgcacccggcgatccggaggttccagggcgc
ctcgtcttcgacctcgatccgggaccgggcgtcagttttggcgacgtgatcgatgcggcc
aagcagatgcgcgagaggttggaggcgctcggcctcaccagtttctgcaagacgaccggc
ggcaagggcttgcacgtcgtcgcgccactggcgcccggcaagcgcagcaaggtcgactgg
ccggctgcgaaggatttcgcgcgtcgcgtctgtgcggatttggccagcgaggaaccctcg
cgctacgtcgtcaacatggccaagcgcctgcgcaacggccgcatcttcctcgactacctc
cgcaacgaccggatggcgacggcggttgcgccgctctcgccacgggcgcgacccggtgcg
catgcctcgatgccgctgacctggtctcaggtcaaatccggtctcgatcccagtcgtttc
acagtgaggaccctgcctggcctgctcaagaagacgggggcctgggaggggtatgacgac
gcggccggctcgatcgcggatgcgatcaaaaagctgggaaagcgagccgaggcagcctga
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