Brevundimonas vancanneytii: NCTC9239_02254
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Entry
NCTC9239_02254 CDS
T06708
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvy
Brevundimonas vancanneytii
Pathway
bvy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC9239_02254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvy03400
]
NCTC9239_02254
Enzymes [BR:
bvy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC9239_02254
DNA repair and recombination proteins [BR:
bvy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC9239_02254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
VTO16932
UniProt:
A0A4P1K9L8
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All DBs
Position
1:complement(2174992..2177523)
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AA seq
843 aa
AA seq
DB search
MRGELKTYQAKRRFEQTPEPKGAKRAGDGARRFVIQRHAATRLHYDFRIEADGVLKSWAV
TKAPSRDPSVKRLAVEVEDHPLDYGDFEGTIPAGNYGAGTVQLWDAGTWEPQEPDLEAAW
ARGQIKMILHGERLKGKWALIRLKSDRGKPSKRNNWLLLKEKDEHAVAGEGDALAEIDAS
VTTGRSLAQIAEGDTQWTSSKPTRRKAPPKPAPSKAASKAKRPHAFVPIQLCKAVDHPPS
AAGWAHEIKFDGYRLQIGVGNGQAVLRTRKGLDWTDRFPELAADAAGWPDAVIDGELCAL
DEDDMPDFSALQAAISEGETGRLVYFAFDLLFEGAEDLRKLPLSHRKARLQAYIDRLGAK
AGGRLRYVEHFASTGQAVLESACRMHLEGVISKKLDAPYHAGRSSTWVKSKCRGRDEVVI
GGWSSEGGRRFRSLLVGVREKGGLKYLGRVGTGFGEAATRLLIPALKAEAADKSPFTGAG
APDGGPDVHWVKPRLVAEIEHGGYTESGSLRQAAFKGLRDDKTAEDVTESPQPPASPSTS
KKGGKVMVAGVVISSPDKVLWPASEGRPPITKADLARYYEAAAERLLPHVADRPTSIIRA
PDGIEGEIFFQRHAMTGSNPRLKLIDVKARTPYVAVVDVGGLAAVAQSGGLELHPWGCKP
GDPETPEQITFDLDPDVGLGFDDVIAASLVVKAKLEALGLKPFVKTTGGKGLHVVAPIRA
DGRSRVTWEQNKAFAKVVSEAIKAEAPDRFTTTLAKKARGGKIFIDYLRNGRMATAVAPW
SPRARPAAGIAFPLSWDQVKPGLRPADYNLWVWPELLERPDPWADFRAAAVSLRPALRKM
GME
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgaactgaagacctatcaggccaagcggcgtttcgagcagacgccggaaccc
aagggcgccaagcgggccggagacggcgcgcggcgcttcgtcatccagcgccatgcggcg
acgcggctgcactacgacttccgtatcgaggcggacggggtgctgaagtcctgggccgtg
accaaggccccgtcgcgcgacccgtcggtcaaacgcctggcggtcgaggtcgaggaccat
ccgctggactacggcgactttgaagggacgatcccggcgggcaactacggcgcgggcacg
gtgcagctgtgggatgccggaacctgggagccgcaggagccggacctggaggccgcctgg
gcgcgcggccagatcaagatgatccttcacggcgagcggctgaagggcaaatgggcgctg
atccggctgaagagcgaccggggcaagccgtccaagcgcaacaactggctgctgctgaag
gagaaggacgagcacgccgtcgccggcgagggcgacgccctggccgagatcgacgcctcg
gtgacgaccggccgctccctggcccagatcgccgagggggacacgcaatggacatcctcc
aagccgacccgccgcaaggcgccgccgaaacccgcgccgtccaaggcggcgtccaaagcg
aagcggcctcacgccttcgtgccgatccagctgtgcaaggcggtggaccacccgccctcg
gccgccggttgggcgcatgagatcaagttcgacggctatcggctgcagatcggggtcggc
aacggtcaggcggtgctgcggacccgcaagggcctggactggaccgatcgcttcccggag
ctggcggcggatgcggccggttggcccgatgcggtgatcgacggtgaactgtgcgccttg
gacgaggatgacatgccggacttcagcgccctgcaggcggcgatatccgagggggagacg
gggcggctggtctatttcgccttcgacctgctgttcgagggggcggaggatctgcgtaag
ctgccgctgtcgcaccgcaaggcgcgattgcaggcctatatcgaccgcctcggcgccaag
gctggagggcgtcttcgctacgtcgagcatttcgcctcgacggggcaggcggtgctggaa
agcgcctgccggatgcatctggagggcgtgatttccaagaagctggacgcgccctatcac
gccgggcggtcctcgacctgggtcaagtcgaagtgccgggggcgcgacgaggtcgtcatc
ggcggctggtcgtcggagggcggccgtcggttccggtcgttgctggtcggggtgcgcgag
aagggcgggttgaaatacctcgggcgcgtcgggacgggcttcggcgaggcggcgacgcgg
ttgctgatccccgcgttgaaggccgaggcggcggacaagagccccttcaccggcgcaggc
gcgcccgacggcggcccggacgttcactgggtgaaacccaggctggtcgccgagatcgag
cacggcggctacaccgagtcaggttcgttgcggcaggcggccttcaagggcctgcgcgac
gacaagaccgctgaggacgtcaccgagtcgccccagccgcccgcgtcgccgtcgacgtcg
aaaaagggcggcaaggtcatggtggcgggcgtcgtcatctccagccctgacaaggtgctg
tggccggcgagcgaaggtcgtccgcccatcaccaaggccgacttggcgcgctattacgag
gcggcggccgagcgcctgctgccccatgtggctgaccggcccacgtcgatcatccgcgcc
ccggacggcatcgaaggcgagattttcttccagcgccacgccatgaccggatcgaaccct
cgtctgaagttgatcgatgtgaaggcgcgcacgccctatgtcgccgtcgtcgatgtgggc
ggcctggccgccgtcgcccagtcgggagggctggaattgcatccctggggctgcaagccg
ggcgatcccgagacgccggagcagatcaccttcgacctggaccccgacgtgggattgggc
ttcgacgacgtgatcgcggcctctcttgtggtgaaggccaagctggaggcgctgggcctc
aagcccttcgtcaagacgacgggcggcaagggtcttcatgtggtcgcgccgatccgcgcc
gacgggcgttcccgcgtgacctgggagcagaacaaggccttcgccaaggtcgtgtccgag
gcgatcaaggccgaggcgccggaccgcttcaccaccaccctggccaagaaggcgcgcggc
ggaaagatctttatcgactatctgcgcaacggccggatggcgaccgccgtggcgccctgg
tcgccgcgtgcgcggccggcggcggggatcgcctttcccctgtcgtgggatcaggtgaag
ccgggactgaggcccgcggactacaatctgtgggtctggcccgaattgcttgagcggccc
gatccctgggccgatttccgcgccgccgccgtcagcctgagacccgccctgcgcaagatg
ggcatggagtga
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