Bradyrhizobium vignae: BRAD3257_2481
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Entry
BRAD3257_2481 CDS
T06968
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvz
Bradyrhizobium vignae
Pathway
bvz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BRAD3257_2481 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvz03400
]
BRAD3257_2481 (ligD)
Enzymes [BR:
bvz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BRAD3257_2481 (ligD)
DNA repair and recombination proteins [BR:
bvz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BRAD3257_2481 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
SPP93552
UniProt:
A0A2U3PWL1
LinkDB
All DBs
Position
BRAD3257:2247842..2250547
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AA seq
901 aa
AA seq
DB search
MNAEREAGPVVLQKLSTYRQKRDFEKTPEPSGRTAVAPSKQRRFVIQKHDATRLHYDLRL
ELDGVFKSWAVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGYW
ESEDPEAGFKKGDLKFTLHGDKLHGSWVLVRMRKRGGEKRTNWLLIKHRDEYVREGADND
ILEQDKSVASGRAMEQIAEGKGRAPKPFMLAKGPKGKADAVWQSNRAEETKGRTVKPAPR
TALKAGKAGKKSATTATNAKKASEMPDFVAPQLCTLVERPPPGEGWCHEIKFDGYRVQLR
VEDGEATLKTRKGLDWTGKFASIAKEAAALPDVMIDGEIVALDHTGAPNFSSLQAALSDG
KTDELIFFAFDLLFAEHEDYRRLPLGERKARLKELLGQRKRKSSQIRYVEHFESGGDAVL
KSACKLELEGVVSKKLDAPYRSGRTESWVKSKCRAGHEVVIGGYKTTSGKFRSLMAGVQR
GDHLAFVGMVGTGFGADKLKRIMPLLKAMETKQNPFGGKNAPKKTRDVHWLKPELVAEIE
FAGFTADGNIRQAAFKGLRQDKPAEEVEAEAPVDTELAEPSARKPARTKAGGQSKQAAQN
AEVMGVVISKPDKELWPDDGNGEPVTKLDLARYLEAVGEWMIVHLKGRPCSLIRAPDGIK
GECFFQRHAMQGQSNLLELARVSGDRKPYLEIDRVEGLAAVAQIGGVELHPWNCAPYAYD
TPGRLVFDLDPAPDVDFAEVVEAAKEMRQRLGDVGMDSFCKTTGGKGLHVVVPLLHGARE
KVSWKEAKAFAQGVCQWMANDDPERYLLNMSKKLRKRKIFLDYLRNDRMSTAVAPLSPRA
RVGATVSMPLTWAQVKSDLDPKKYTLRTVPGLLPRSKAWEGYDDAAASIKAAMKKLAAKA
R
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgccgaaagagaagcgggaccggtcgtgctgcaaaaactctccacttaccgacag
aagcgtgacttcgagaagacgcccgaaccatcgggcaggaccgcagtggccccctcgaaa
cagcggcggttcgtgatccagaagcacgacgcgacgcgcctgcattacgatctccggctc
gaactcgacggcgtgttcaagtcctgggcggtgacgaaagggccctcgctcgatccgcac
gacaagcgcctcgcggtcgaggtcgaggaccacccgctcgactatggtgatttcgaaggc
acgatacccgaaggccaatatggcggcggcaccgtgatgctgtgggatcgaggctattgg
gaatcggaagatccggaagccggcttcaagaagggtgatctcaagttcacgctccacggc
gacaagctgcatggcagctgggtcctggtgcgcatgcgcaagcgcggcggcgagaagcgg
accaactggctgctgatcaagcatcgtgacgaatatgtccgcgaaggcgcggacaacgac
attctggagcaggacaagtccgtcgcctccggccgcgcgatggagcagatcgccgaaggc
aagggccgcgcgccgaagccgttcatgctggccaagggtcccaagggcaaggccgatgca
gtctggcagtccaaccgtgccgaggagacgaaagggcgtacggtgaagccggcgccgcga
acggcgttgaaagccggcaaagcggggaagaagagcgccacgaccgcgacgaacgccaag
aaggcctcggagatgccggacttcgttgcgccccagctctgtacgctggtcgagcggccg
ccgcccggcgagggctggtgccacgagatcaagttcgacggctaccgggtgcagctccgg
gtcgaggacggcgaggcgacgctgaagacgcgcaagggtctcgactggaccggcaagttc
gcctccattgccaaggaagcggcagcgctgccggacgtgatgatcgacggagagatcgtc
gcactcgaccataccggcgcgccgaacttctcctcgctgcaagctgcgctgtccgatggc
aagaccgacgagctgatcttctttgccttcgacctgcttttcgcggagcacgaggattac
cgtcgtctgccgctcggcgaacgcaaggcccggctgaaggagctgctgggccagcgcaag
cggaaatcgagccagatccgctatgtcgagcatttcgagagcggcggtgatgccgtgctc
aaatcggcctgcaagctcgagctcgaaggcgtggtgtcgaagaagctggatgccccgtat
cggtccggccgcaccgagagctgggtcaagtcgaaatgccgggccggccacgaggtggtg
atcggcggctacaagaccaccagcggtaaattccgctcgctgatggccggcgtgcagcgt
ggcgatcatctcgccttcgtcggcatggtcggcaccggctttggcgcggacaagctcaag
cgcatcatgcctcttctgaaggccatggagaccaagcaaaaccccttcggcggcaagaac
gcaccgaagaagacccgcgacgtgcactggctgaagccggagctcgtcgccgagatcgag
tttgccggcttcaccgccgacggcaatattcgccaggcggcattcaagggattgcggcag
gacaagccggccgaggaggtcgaggccgaggcgccggtcgataccgagctcgccgaaccc
tcggccaggaagccggcgcgcacgaaggcgggcggacaatcgaagcaggccgctcaaaat
gccgaggtcatgggtgtcgtcatctccaaaccggacaaggagctctggcctgatgacggc
aatggtgagcccgtcaccaagctggaccttgcccgctatctcgaagccgtcggcgaatgg
atgatcgtgcacctcaagggccggccttgttcgctgatccgcgcccccgacggtatcaag
ggcgaatgcttcttccagcgccacgccatgcaggggcagtcgaaccttctggagctcgcg
cgggtctccggcgaccgcaagccctatctcgagatcgatcgggtcgaggggcttgccgcc
gtggcgcagatcggcggcgtcgagttgcatccctggaactgcgcgccttatgcctacgac
acgccgggccggctggtgttcgatctcgatcccgcgcccgacgtggacttcgccgaggtc
gtcgaagcggccaaggagatgcggcagcggctgggtgatgtcggcatggacagcttctgc
aagaccacgggcggcaagggcctccacgtggtggtgccgctgctccacggcgcgcgcgag
aaggtgagctggaaggaagccaaggcatttgcacaaggcgtctgccagtggatggccaat
gacgatcccgaacgctatctgctcaacatgtcgaagaagctgcgcaagcgaaagatcttc
ctggattatctccgcaacgaccgcatgtcgaccgcggttgccccgctgtcgccgcgggcg
cgcgtcggcgccacggtatcgatgccgctgacttgggcgcaggtgaagagcgatctcgat
ccgaagaagtatacgctgcgcaccgtgccgggcctgttgccgagatcgaaagcatgggag
ggttatgacgatgccgccgcgtcgatcaaagcggcgatgaagaagctggcggcgaaggcg
aggtag
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