Bacillus weihaiensis: A9C19_12900
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Entry
A9C19_12900 CDS
T04822
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bwh
Bacillus weihaiensis
Pathway
bwh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A9C19_12900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bwh03400
]
A9C19_12900
Enzymes [BR:
bwh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A9C19_12900
DNA repair and recombination proteins [BR:
bwh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A9C19_12900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
DNA_primase_S
DUF5006
Motif
Other DBs
NCBI-ProteinID:
APH05577
UniProt:
A0A1L3MTB8
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All DBs
Position
2738874..2740706
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AA seq
610 aa
AA seq
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MKPMLPTLQSSLPYQNEWIYETKYDGFRGILSITSTTISLTSRNEKSLNHSFPEIIETVE
AILPSLSSLVPLTIDGEIVQLRNNHASDFETIQIRGRLRSTEKIRILSKEAPCSFLAFDL
LEVRGSLITNQPLENRKHQLRDLFESLQLPLTVRKSNDNILQYVPYSTNYSELWEEISLK
GGEGIIAKHKNSKWESGHRSKQWIKVKNYKRAHCFITGYDKENGYFHLGVFRNGVIIQVG
VVSHGMSSDERSALLTIISENKGKENDFFIEIAPAIIVEIQFLSLYKEQLREPSFSGFRF
DKQIEECSWDMLLLSTAPIHKEVVITHPDKPLFKTVDVKKEKYLSYLFQISDYMLPFIND
RLLTVIRFPHGMFGEAFYQKNCPDYAPDFIKRAHSEDIEYIVCDSLSSLLWLGNQLAFEF
HIPFQTINSKNPIEIVFDLDPPSREYFHLAVKAAQEMKKIFDQFQLKTFPKLSGNKGLQI
HIPLTKNSLTYDQTRVFTQFIAEYLVTTFPDDFTVERMKKNRGNRLYLDYIQHAEGKTII
APYSLRGKNDGAFIAAPLHWEEVNDELNIEQFTMDYVLDRIKTLECPFKEYYTSPQDSMI
EPIIRKILTE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccatgcttccaacattacaatcaagtcttccctatcagaatgaatggatttac
gaaacaaagtatgacggatttagaggaattttatctatcacaagtaccacgattagctta
acaagtcgaaatgaaaaatctctaaatcattcgtttcctgaaattattgaaacagtagag
gctatcctaccatcattatcttctttagtgcctcttactatagatggtgaaatcgttcaa
ttaagaaataatcatgcctcagattttgaaaccatacaaattcgtggtcgtttaagaagt
actgaaaaaattaggattttatctaaagaagcgccttgctctttcttagcctttgaccta
ttagaagtgagaggatcacttataacaaatcaacctttagaaaatcgaaaacatcagtta
agagacctatttgaatccttgcaattacctctaaccgtgagaaagtctaacgacaatatc
ttacagtatgttccatactcaaccaactattcagaactatgggaagagatttcacttaaa
ggtggagaaggaatcatagctaagcataaaaacagtaaatgggagagcggtcaccgatct
aagcaatggattaaggtaaaaaattacaagcgcgctcattgttttataacagggtatgac
aaagaaaatgggtactttcatcttggcgtgtttcgtaatggtgtcattatacaggtcggt
gttgtttctcatggtatgtctagtgatgagcgatctgctttactgaccatcatttctgaa
aacaaaggtaaagaaaatgatttctttattgagatagcacctgccatcatagttgaaatt
caatttttatcactttacaaagaacaacttagagaaccatctttttcaggctttcgtttt
gacaaacaaattgaagagtgttcgtgggatatgctattgctatctaccgcaccaattcat
aaagaagtcgtaatcacacatccagacaaaccactttttaaaacggttgatgtaaaaaag
gaaaagtacttaagctatttgtttcaaatctctgattacatgctaccttttatcaatgat
cgtttgttaacggtcattcgctttccccatgggatgtttggtgaagccttttatcaaaaa
aattgtcctgactatgcacccgactttatcaaaagagcgcactcagaagatattgagtat
attgtttgcgattctctctcaagtttattatggctaggaaatcaacttgcctttgagttt
catatcccgtttcaaaccatcaatagtaaaaatccaattgaaattgtgtttgatttagat
cctccttcaagagaatactttcatttagctgttaaagcagctcaggaaatgaaaaagatt
ttcgaccaatttcaattgaaaacatttccgaagttatccggtaataaagggttgcaaata
catattcctttaaccaaaaattcactaacttatgatcaaacaagagttttcacacaattt
attgctgaatatcttgttactacctttcccgatgattttacagttgaacgaatgaagaaa
aaccgtggtaatcgattgtaccttgactatatacagcacgctgagggaaaaacaatcata
gcaccttattcccttagaggaaaaaacgatggagccttcatcgccgcacctcttcattgg
gaggaagtaaacgatgaattaaacatagaacaatttactatggattatgttctagatcga
ataaaaacactagaatgtccatttaaagaatattacactagcccacaggatagtatgatt
gaaccaattattagaaaaatattaactgaatga
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