Bradyrhizobium xenonodulans: I3J27_29410
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Entry
I3J27_29410 CDS
T09324
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bxn
Bradyrhizobium xenonodulans
Pathway
bxn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bxn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I3J27_29410 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bxn03400
]
I3J27_29410 (ligD)
Enzymes [BR:
bxn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I3J27_29410 (ligD)
DNA repair and recombination proteins [BR:
bxn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I3J27_29410 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WBL77112
LinkDB
All DBs
Position
complement(6204290..6206950)
Genome browser
AA seq
886 aa
AA seq
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MLQKLSTYRRKRDFEKTPEPSGKSAVAPSKQRRFVIQKHDASRLHYDLRLEFDGVFKSWA
VTKGPSLDPQDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPEAGFK
KGDLKFTLHGDKLHGSWVLVRMRNRGGEKRTNWLLIKHRDEYASEGEDILAEDKSVASGR
AMAQIADGKGRAPKPFMLAKGAGKADAVWQSNRAEEPKGRTVKPAPRVALKAGRTAKKTA
TTAANAKKVAEMPDFVAPQLCTLVERPPAGEGWCHEIKFDGYRVQLRVEDGEVALKTRKG
LDWTGKFGSIAKEAAVLPDVIIDGEIVALDHNGAPNFSSLQAALSDGKTEELIFFAFDLL
FAEGLDHRRLPLGERKQRLKELLEARKKKGGQIRYVEHFESGGDAVLQSACKLELEGVVS
KKLDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTAGKFRSLMAGVYRGDHLAFVGMVGTG
FGADKVKRIMPLLKEAASSESPFGGKNVPKKTRDVHWVKPELVAEIEFAGFTADGNIRQA
AFKGLRQDKPAEEVEAETPADTELAKPSARKRAAPKTAKRKDTGTAEVMGVVISKPDKEL
WPDGGDGEGVTKLDLARFFEAVGGWMIVHLKGRPCSILRAPDGIGGEKFFQRHAMQGTSS
LLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVFDLDPAPDV
KFADVVDAAKEMRQRLTDVGMDSFCKTTGGKGLHVVVPLLHGARDKVSWKEAKAFAQGVC
QWMADDDPERYLLNMSKKLRNGKIFLDYLRNDRMSTAVAPLSPRARDGATVSMPVTWAQV
KGDLDPKRYTVRTVPGLLARSKAWEGYDDAASSIKAAMKKLAGKMK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcagaaactctccacctaccgacggaagcgtgacttcgagaagacacccgagcca
tcgggtaagtccgccgtggcgccatcgaagcagcggcgcttcgtgatccagaagcacgat
gcgtcacggctgcactacgatctccggcttgagttcgatggcgtcttcaagtcctgggcc
gtgacgaagggcccctcgctcgatccgcaagacaaacggctggccgtcgaggtggaggat
catccgctcgactatggcgatttcgaaggaacgattccggaagggcagtatggcggtggc
accgtgatgctgtgggaccgcggcacctgggaatcggacgatccggaagccggcttcaag
aagggcgacctgaaattcacgctgcatggcgacaagctgcatggcagctgggtgctggtg
cggatgcgtaatcgtggcggcgaaaaacgcaccaactggctcctgatcaagcatcgcgac
gaatatgccagcgagggcgaggatattctggcggaggacaagtccgtcgcgtccggccgt
gccatggcgcagatcgcggatggcaaggggcgcgcgccaaagccgttcatgctggcgaaa
ggcgcgggcaaggccgatgcggtctggcagtccaatcgcgcggaggagccgaaagggcgc
accgtcaagccggcgccgcgcgtggcgctgaaggccggaagaacggcgaagaagacggcc
acgacagcagcgaacgccaaaaaggtcgccgagatgccggacttcgtggcgccacaactc
tgcacgctggtcgagcggccgccggccggcgagggctggtgccacgagatcaagttcgat
gggtatcgcgtgcagctccgggtcgaggacggcgaggtggcgctgaagacgcgcaagggt
ctcgactggaccggcaagtttggctccattgccaaggaggcagccgtgctgccggacgtc
ataatcgacggcgagatcgtcgcgctcgaccataacggtgcgccgaacttctcctcgctt
caggcggcgctgtcggacggcaagaccgaggagctcatcttcttcgccttcgatctcctg
ttcgcagaagggctggaccatcgccgcctgccgctcggcgagcgcaagcagcgcctcaag
gaattgctggaagcgcgcaagaagaagggcggccagatccgctatgtcgagcatttcgag
agcggcggcgatgcggtgctgcaatcggcctgcaagctcgagctcgaaggcgtggtgtcg
aagaagctcgatgcgccgtaccggtcgggccgcaccgagagctggaccaaggcaaaatgc
cgcgcagggcatgaggtcgtgatcggcggctggaagacgacggcggggaaattccgctcg
ctgatggccggcgtctatcgcggcgatcatctcgccttcgtcggcatggtcggcaccggc
tttggtgctgacaaggtcaagcgcatcatgccgctgctgaaggaggcggcgtcgagcgaa
agcccgttcggcggcaagaatgtgccgaagaagacgcgcgatgtgcactgggtcaagcct
gaactcgtcgccgagatcgaattcgcaggcttcaccgccgacggcaatatccgccaggcg
gccttcaagggcctgcggcaggacaagccggccgaggaggtcgaggcggaaacgcccgcc
gacaccgagctcgcaaaaccctcggccaggaaacgcgccgcgccgaagaccgccaagcgg
aaggataccggcacggccgaggtgatgggcgtcgtcatctcgaagccggacaaggagcta
tggccggacggcggcgacggcgagggcgtcacaaagctcgatctcgcgcgcttcttcgag
gcggtcggcggctggatgatcgtccatctgaaggggcggccctgctcgatcctgcgtgct
cccgacggcattggcggcgaaaagttcttccagcgccatgccatgcagggcacatcgagc
ctgctcgaactcgcaaaggtctccggcgaccgcaagccgtatttgcagatcgatcgcgtc
gaggggcttgccgccgtcgcgcagatcggcggcgtcgagctgcatccctggaattgtgcc
ccggatgcctatgacacgccgggccggctggtgttcgacctcgatccggcgccggacgtc
aagttcgccgatgtcgtggacgcggccaaggagatgcggcagcgcctcaccgacgtcggc
atggacagcttttgcaagaccaccggcggcaagggcctgcatgtggttgtgccgctgctc
catggcgcgcgcgacaaggtgagctggaaggaggccaaggcgttcgcgcaaggcgtctgc
caatggatggccgatgacgatcccgagcgctatctgctcaacatgtcgaagaagctgcgc
aacggaaagatctttctcgactatcttcgcaacgaccggatgtcgacggcggtggcaccg
ctgtctccgcgtgcgcgcgatggcgcgacagtgtcgatgcctgtgacatgggcacaggtg
aagggcgatctcgatccgaagcgctatacggtgcggacggtgccgggcctgctggcgcga
tcgaaagcgtgggagggctatgatgatgcggcgtcgtcgatcaaggcggcgatgaagaag
ctggcggggaagatgaagtag
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