KEGG   Bradyrhizobium xenonodulans: I3J27_29410
Entry
I3J27_29410       CDS       T09324                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bxn  Bradyrhizobium xenonodulans
Pathway
bxn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bxn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    I3J27_29410 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bxn03400]
    I3J27_29410 (ligD)
Enzymes [BR:bxn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     I3J27_29410 (ligD)
DNA repair and recombination proteins [BR:bxn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     I3J27_29410 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: WBL77112
LinkDB
Position
complement(6204290..6206950)
AA seq 886 aa
MLQKLSTYRRKRDFEKTPEPSGKSAVAPSKQRRFVIQKHDASRLHYDLRLEFDGVFKSWA
VTKGPSLDPQDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPEAGFK
KGDLKFTLHGDKLHGSWVLVRMRNRGGEKRTNWLLIKHRDEYASEGEDILAEDKSVASGR
AMAQIADGKGRAPKPFMLAKGAGKADAVWQSNRAEEPKGRTVKPAPRVALKAGRTAKKTA
TTAANAKKVAEMPDFVAPQLCTLVERPPAGEGWCHEIKFDGYRVQLRVEDGEVALKTRKG
LDWTGKFGSIAKEAAVLPDVIIDGEIVALDHNGAPNFSSLQAALSDGKTEELIFFAFDLL
FAEGLDHRRLPLGERKQRLKELLEARKKKGGQIRYVEHFESGGDAVLQSACKLELEGVVS
KKLDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTAGKFRSLMAGVYRGDHLAFVGMVGTG
FGADKVKRIMPLLKEAASSESPFGGKNVPKKTRDVHWVKPELVAEIEFAGFTADGNIRQA
AFKGLRQDKPAEEVEAETPADTELAKPSARKRAAPKTAKRKDTGTAEVMGVVISKPDKEL
WPDGGDGEGVTKLDLARFFEAVGGWMIVHLKGRPCSILRAPDGIGGEKFFQRHAMQGTSS
LLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVFDLDPAPDV
KFADVVDAAKEMRQRLTDVGMDSFCKTTGGKGLHVVVPLLHGARDKVSWKEAKAFAQGVC
QWMADDDPERYLLNMSKKLRNGKIFLDYLRNDRMSTAVAPLSPRARDGATVSMPVTWAQV
KGDLDPKRYTVRTVPGLLARSKAWEGYDDAASSIKAAMKKLAGKMK
NT seq 2661 nt   +upstreamnt  +downstreamnt
gtgctgcagaaactctccacctaccgacggaagcgtgacttcgagaagacacccgagcca
tcgggtaagtccgccgtggcgccatcgaagcagcggcgcttcgtgatccagaagcacgat
gcgtcacggctgcactacgatctccggcttgagttcgatggcgtcttcaagtcctgggcc
gtgacgaagggcccctcgctcgatccgcaagacaaacggctggccgtcgaggtggaggat
catccgctcgactatggcgatttcgaaggaacgattccggaagggcagtatggcggtggc
accgtgatgctgtgggaccgcggcacctgggaatcggacgatccggaagccggcttcaag
aagggcgacctgaaattcacgctgcatggcgacaagctgcatggcagctgggtgctggtg
cggatgcgtaatcgtggcggcgaaaaacgcaccaactggctcctgatcaagcatcgcgac
gaatatgccagcgagggcgaggatattctggcggaggacaagtccgtcgcgtccggccgt
gccatggcgcagatcgcggatggcaaggggcgcgcgccaaagccgttcatgctggcgaaa
ggcgcgggcaaggccgatgcggtctggcagtccaatcgcgcggaggagccgaaagggcgc
accgtcaagccggcgccgcgcgtggcgctgaaggccggaagaacggcgaagaagacggcc
acgacagcagcgaacgccaaaaaggtcgccgagatgccggacttcgtggcgccacaactc
tgcacgctggtcgagcggccgccggccggcgagggctggtgccacgagatcaagttcgat
gggtatcgcgtgcagctccgggtcgaggacggcgaggtggcgctgaagacgcgcaagggt
ctcgactggaccggcaagtttggctccattgccaaggaggcagccgtgctgccggacgtc
ataatcgacggcgagatcgtcgcgctcgaccataacggtgcgccgaacttctcctcgctt
caggcggcgctgtcggacggcaagaccgaggagctcatcttcttcgccttcgatctcctg
ttcgcagaagggctggaccatcgccgcctgccgctcggcgagcgcaagcagcgcctcaag
gaattgctggaagcgcgcaagaagaagggcggccagatccgctatgtcgagcatttcgag
agcggcggcgatgcggtgctgcaatcggcctgcaagctcgagctcgaaggcgtggtgtcg
aagaagctcgatgcgccgtaccggtcgggccgcaccgagagctggaccaaggcaaaatgc
cgcgcagggcatgaggtcgtgatcggcggctggaagacgacggcggggaaattccgctcg
ctgatggccggcgtctatcgcggcgatcatctcgccttcgtcggcatggtcggcaccggc
tttggtgctgacaaggtcaagcgcatcatgccgctgctgaaggaggcggcgtcgagcgaa
agcccgttcggcggcaagaatgtgccgaagaagacgcgcgatgtgcactgggtcaagcct
gaactcgtcgccgagatcgaattcgcaggcttcaccgccgacggcaatatccgccaggcg
gccttcaagggcctgcggcaggacaagccggccgaggaggtcgaggcggaaacgcccgcc
gacaccgagctcgcaaaaccctcggccaggaaacgcgccgcgccgaagaccgccaagcgg
aaggataccggcacggccgaggtgatgggcgtcgtcatctcgaagccggacaaggagcta
tggccggacggcggcgacggcgagggcgtcacaaagctcgatctcgcgcgcttcttcgag
gcggtcggcggctggatgatcgtccatctgaaggggcggccctgctcgatcctgcgtgct
cccgacggcattggcggcgaaaagttcttccagcgccatgccatgcagggcacatcgagc
ctgctcgaactcgcaaaggtctccggcgaccgcaagccgtatttgcagatcgatcgcgtc
gaggggcttgccgccgtcgcgcagatcggcggcgtcgagctgcatccctggaattgtgcc
ccggatgcctatgacacgccgggccggctggtgttcgacctcgatccggcgccggacgtc
aagttcgccgatgtcgtggacgcggccaaggagatgcggcagcgcctcaccgacgtcggc
atggacagcttttgcaagaccaccggcggcaagggcctgcatgtggttgtgccgctgctc
catggcgcgcgcgacaaggtgagctggaaggaggccaaggcgttcgcgcaaggcgtctgc
caatggatggccgatgacgatcccgagcgctatctgctcaacatgtcgaagaagctgcgc
aacggaaagatctttctcgactatcttcgcaacgaccggatgtcgacggcggtggcaccg
ctgtctccgcgtgcgcgcgatggcgcgacagtgtcgatgcctgtgacatgggcacaggtg
aagggcgatctcgatccgaagcgctatacggtgcggacggtgccgggcctgctggcgcga
tcgaaagcgtgggagggctatgatgatgcggcgtcgtcgatcaaggcggcgatgaagaag
ctggcggggaagatgaagtag

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