Bacillus velezensis YAU B9601-Y2: BANAU_1254
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Entry
BANAU_1254 CDS
T02050
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bya
Bacillus velezensis YAU B9601-Y2
Pathway
bya03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BANAU_1254 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bya03400
]
BANAU_1254 (ligD)
Enzymes [BR:
bya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BANAU_1254 (ligD)
DNA repair and recombination proteins [BR:
bya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BANAU_1254 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DUF2532
Motif
Other DBs
NCBI-ProteinID:
CCG49275
LinkDB
All DBs
Position
complement(1304696..1306519)
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AA seq
607 aa
AA seq
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MQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFAARCF
QHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFDLLVL
EGAGTVSLPYVKRKRALSKLFKEANLPACPHHLAEEAIQYIPEHTDFDALWAKVVRHDGE
GVVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPIASVS
HGMQAEEKNAVRTIMETHGKKLPSGEYILEPSICMTVQYLTILQDTLREVSFVSFQFEMD
WTECTYQQLILRSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLKDRAV
TVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSIPSLLWLANQLALEFHVP
FQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQLYIP
LSPEAFSYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTIIAPY
STRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPLSIVL
EQIKRKS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgattttgacctctgtaccgcctgaaggcagtgagtggcgctatgaggtaaag
tatgacggattccgctgtcttctccgcatagacgaaagcggcgttacattaaccagcaga
aacggacagacgctgacgaatcaatttccggaaatcacggcttttgcggcccggtgtttt
cagcacatgaaagacaggttccccatcacgcttgatggagagcttgtctatttaatcaat
ccgtacagagcggactttgagcatcttcaaatccgcggacgtttaaaacggacggaagca
attgaaagcaccgctgatagacggccgtgccgctttctggcatttgatctcctcgttctg
gaaggcgccggcaccgtctcattaccgtatgtgaaacggaagcgcgccctttccaaactg
tttaaagaagcaaatcttcccgcctgccctcatcacttagcggaagaagcgattcaatac
attccggaacacactgactttgatgcgctttgggccaaggtcgtccgccatgacggagaa
ggtgtcgtagcaaaaagagcatcaagcggctgggcggaaaataaacgctctcccgactgg
caaaagtataaacatatgaaaacggcacatgtgctattaaccgggtttaatccgaagaac
gggtatgtaacagcctctgttttaaaagacggcaccgccgtcccgatcgcttccgtttcc
cacggcatgcaggcggaagaaaaaaacgccgtcagaaccattatggagacccacggaaaa
aaactgccaagcggcgagtatatacttgagccttctatctgcatgaccgtgcagtattta
accatattgcaggacacgctgcgtgaagtatcttttgtgtcttttcagtttgaaatggat
tggacggaatgcacgtatcagcagcttatcctccgctctaaaacgctgccgccgaagctg
cagttcacaagcctggataagatcgtttttaaaaaacgtgaaaaaacgaaagcagatttc
cttagttatatggtgaaaatgagcgattttcttatgccctttcttaaagatcgggccgtc
acggtgatccgttatccgcacggcgcgcctggcgaatctttttttcaaaaaaacaaaccg
gactacacgccggactttgtctcaagcgtgtttgacgggagccacgagcacatcgtatgc
agcagcataccgtcacttctatggctggccaatcagctggcgcttgaatttcacgttccg
tttcagacagtgcattctgaaagacccgcagagattgtaattgaccttgatcctccgtca
aggaatgattttcccatggcagtggaggctgcgcatgtgctgaaacagctgtttgactca
ttcagcattacgtcattcccgaagctctccggaaataaaggcattcagctctacatcccg
ctttcaccggaagcattcagctatgaagaaacccgtgcgttcacaatgctcatcgccgat
tattgcgtcaggacgcgcccggatctttttacgacagagcggtttatcaaaaaccgaaac
ggcaggctctacctagattatttgcagcatgccgaagggaaaaccattatcgccccctat
tcgacccggggcaacgaattgggaacggttgcggctcccctttattggagcgaagtcaac
tcctctttaacacctgatgattatacgatcgatacagtagtgaaccgcgtcaggacagag
ggagatccgttttatgatttttaccggaatccgcaggacggcccgctttcaatcgtgctt
gagcaaatcaagagaaagagctga
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