KEGG   Bipolaris zeicola: COCCADRAFT_10299
Entry
COCCADRAFT_10299  CDS       T03110                                 
Name
(RefSeq) hypothetical protein
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
bze  Bipolaris zeicola
Pathway
bze03022  Basal transcription factors
bze03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    COCCADRAFT_10299
  09124 Replication and repair
   03420 Nucleotide excision repair
    COCCADRAFT_10299
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bze03021]
    COCCADRAFT_10299
   03400 DNA repair and recombination proteins [BR:bze03400]
    COCCADRAFT_10299
Transcription machinery [BR:bze03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     COCCADRAFT_10299
DNA repair and recombination proteins [BR:bze03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     COCCADRAFT_10299
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 19142676
NCBI-ProteinID: XP_007718735
JGI: 10299
UniProt: W6XIQ9
LinkDB
Position
Unknown
AA seq 482 aa
MSASSSAQALEYLEGLPLATHKKLYEQPSTVLAVFRCMLPHLAKSIVMAMLYMPTPFPAA
DLDTWFKPTARKEKERATFTLDRLHIVTSARQDNGTLSWTLNPGFQRSLRNAIEGSGTHR
SFGVPATKEESGKRVSIEFLDEYSRSQWEGILYYLVSGAAGLSKDSISRAEVGPGTKKLL
HTGDLVRTIHGSPRITKDGFSFVLQETNAQVWSLLIVYLKMTNELGMSETEVLSFLFMLG
SLELGQDYSTSTLSATQLQMLEDLSAMGLVYRSDRNARTFYPTRLATTLTSDSGSAMSAS
SNDIAQASTSTTGPPTAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSG
KLTKESVHKAVQAGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETT
TGYLMREFGSDAEYRDVLNYASALGVLVWQNDANRCFFVSHVEQISAYLRKKKENRENAR
GR
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgtcggcctcgtcctctgctcaggcgttggaataccttgagggtctcccgctggccaca
cacaagaagctgtatgagcagccttcgacagtcctcgcggtattccgctgcatgctaccg
catcttgccaagtcaatagtcatggctatgctctacatgcccactcccttccccgccgcc
gaccttgatacctggttcaaacccactgcacgcaaagagaaagagcgggcgacctttacc
ctcgaccgtctgcatattgttacctcggcgcgacaggacaacggcactctgtcgtggaca
ctcaatccaggcttccaacgcagccttcgaaacgccatcgagggctctggtactcatcga
tcttttggagtgccggcgacaaaagaagagagtggaaagcgcgtcagtatcgagttcttg
gacgagtattcgaggtcgcaatgggagggcatattgtactaccttgtaagcggtgcggcc
ggtctcagcaaagacagcatttctagagctgaggttggtcctggcaccaagaagctatta
catactggagatctggtgcgcacgatacatggtagtccaagaatcacaaaagatggcttc
tctttcgtgctacaagagacgaatgcgcaggtttggagtctgctgattgtctatttgaag
atgacgaacgagctcggcatgtctgagaccgaagttctctcattcctcttcatgcttggc
tcgcttgaattgggacaagattactctacctccaccctctcggcgacccagctccaaatg
ctcgaggatctctctgcaatgggtcttgtataccgctccgacaggaatgcacgaactttt
taccccacccggttagctacaacgctcacgtcagactctggaagtgccatgtcggcctcc
tccaacgatattgcacaagcaagcacaagcaccaccggacctccaacggcagcaaataag
ggcttcataatcatcgaaaccaactaccgcctctatgcctacaccaacagtctgatccaa
atcgccattctctctctcttcaccaaacttcagcatcgctttcccaacctcgtctcggga
aaactaacaaaggagtctgtgcacaaagccgtccaggcaggcattacatcagcacaaatt
atctcctacctaaccacctatgcccacccgcagatgcaaaaaaccgtcccctacatcccg
ccaaccgtcatggatcaaattcgtctctgggaatatgagggcgagcgtgtcgaaacgaca
acgggttacttgatgcgcgagtttggttcggacgcagagtatagagatgttttgaactat
gctagtgctttgggggtgctagtctggcagaatgacgctaataggtgcttttttgtcagc
catgtcgaacagattagcgcgtatttaaggaagaagaaggaaaacagagaaaacgctagg
ggtcgataa

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