Bipolaris zeicola: COCCADRAFT_10299
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Entry
COCCADRAFT_10299 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
bze
Bipolaris zeicola
Pathway
bze03022
Basal transcription factors
bze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
COCCADRAFT_10299
09124 Replication and repair
03420 Nucleotide excision repair
COCCADRAFT_10299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bze03021
]
COCCADRAFT_10299
03400 DNA repair and recombination proteins [BR:
bze03400
]
COCCADRAFT_10299
Transcription machinery [BR:
bze03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
COCCADRAFT_10299
DNA repair and recombination proteins [BR:
bze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
COCCADRAFT_10299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
19142676
NCBI-ProteinID:
XP_007718735
JGI:
10299
UniProt:
W6XIQ9
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MSASSSAQALEYLEGLPLATHKKLYEQPSTVLAVFRCMLPHLAKSIVMAMLYMPTPFPAA
DLDTWFKPTARKEKERATFTLDRLHIVTSARQDNGTLSWTLNPGFQRSLRNAIEGSGTHR
SFGVPATKEESGKRVSIEFLDEYSRSQWEGILYYLVSGAAGLSKDSISRAEVGPGTKKLL
HTGDLVRTIHGSPRITKDGFSFVLQETNAQVWSLLIVYLKMTNELGMSETEVLSFLFMLG
SLELGQDYSTSTLSATQLQMLEDLSAMGLVYRSDRNARTFYPTRLATTLTSDSGSAMSAS
SNDIAQASTSTTGPPTAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSG
KLTKESVHKAVQAGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETT
TGYLMREFGSDAEYRDVLNYASALGVLVWQNDANRCFFVSHVEQISAYLRKKKENRENAR
GR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcctcgtcctctgctcaggcgttggaataccttgagggtctcccgctggccaca
cacaagaagctgtatgagcagccttcgacagtcctcgcggtattccgctgcatgctaccg
catcttgccaagtcaatagtcatggctatgctctacatgcccactcccttccccgccgcc
gaccttgatacctggttcaaacccactgcacgcaaagagaaagagcgggcgacctttacc
ctcgaccgtctgcatattgttacctcggcgcgacaggacaacggcactctgtcgtggaca
ctcaatccaggcttccaacgcagccttcgaaacgccatcgagggctctggtactcatcga
tcttttggagtgccggcgacaaaagaagagagtggaaagcgcgtcagtatcgagttcttg
gacgagtattcgaggtcgcaatgggagggcatattgtactaccttgtaagcggtgcggcc
ggtctcagcaaagacagcatttctagagctgaggttggtcctggcaccaagaagctatta
catactggagatctggtgcgcacgatacatggtagtccaagaatcacaaaagatggcttc
tctttcgtgctacaagagacgaatgcgcaggtttggagtctgctgattgtctatttgaag
atgacgaacgagctcggcatgtctgagaccgaagttctctcattcctcttcatgcttggc
tcgcttgaattgggacaagattactctacctccaccctctcggcgacccagctccaaatg
ctcgaggatctctctgcaatgggtcttgtataccgctccgacaggaatgcacgaactttt
taccccacccggttagctacaacgctcacgtcagactctggaagtgccatgtcggcctcc
tccaacgatattgcacaagcaagcacaagcaccaccggacctccaacggcagcaaataag
ggcttcataatcatcgaaaccaactaccgcctctatgcctacaccaacagtctgatccaa
atcgccattctctctctcttcaccaaacttcagcatcgctttcccaacctcgtctcggga
aaactaacaaaggagtctgtgcacaaagccgtccaggcaggcattacatcagcacaaatt
atctcctacctaaccacctatgcccacccgcagatgcaaaaaaccgtcccctacatcccg
ccaaccgtcatggatcaaattcgtctctgggaatatgagggcgagcgtgtcgaaacgaca
acgggttacttgatgcgcgagtttggttcggacgcagagtatagagatgttttgaactat
gctagtgctttgggggtgctagtctggcagaatgacgctaataggtgcttttttgtcagc
catgtcgaacagattagcgcgtatttaaggaagaagaaggaaaacagagaaaacgctagg
ggtcgataa
DBGET
integrated database retrieval system