Bipolaris zeicola: COCCADRAFT_83033
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Entry
COCCADRAFT_83033 CDS
T03110
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bze
Bipolaris zeicola
Pathway
bze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCCADRAFT_83033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bze03021
]
COCCADRAFT_83033
03019 Messenger RNA biogenesis [BR:
bze03019
]
COCCADRAFT_83033
Transcription machinery [BR:
bze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
COCCADRAFT_83033
Messenger RNA biogenesis [BR:
bze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
COCCADRAFT_83033
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
VHS
Motif
Other DBs
NCBI-GeneID:
19151483
NCBI-ProteinID:
XP_007707247
JGI:
83033
UniProt:
W6YLV1
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MSLPAAEVAADFRDALQDLRMNSRPEISNLTLIAKENTEYAEAISNELQKHIQSTRPEWK
LPALYVLDSIVKNVGTPYTVYIGRNLYRTFMDAYLVMDQATRKNMEGLLKTWKMPVPESM
DPRPVFSADVTQDIENALAKFHAAQQQVRPQHALPPRPPSLNVAWRGTSTPPQNGPRYAA
PNDPRARPSYPSTPQYGPTAHAPTPPVAYAQSQQPPSPMSSIDLAGLKAEVTQLISTTQN
TFAQNPADAALRTKLSALLSLKQILDTQTLPPQQLEAVRQQIRALAPPPAPTPSFAPSTP
VYPPQQTAAPGYPAQFPAVTASPVNVPPNVAQLLAGFIPQSTPQPAPTPTPPVLNLAELL
KRVSSPAQSSSVPAPAPFQPPFQAFPPPISTPVPAPQSAPPAQSATPTTNLAALLAQFSK
PAAAPPSVQPTPVQSTPVPQLPLQPAAPPPALGSAEWLLKALSSVSGPTPVNGVPNPLQQ
GTEQSVAPVGLLDQIELTTASMKKPRLHLISHLYETKPNICATCGRRFENTAEGKEKKAR
HMDWHFKVKDPDAAKRGVHRSWYIPEKEWIEYRELDETAPNQSNHPSSGNNAAKPKKQTK
DRYVSVPQDVTLQQAPCPICQEKFETQWNVEANDFVWMDALSVGGKVYHATCFEEYSKGI
GIEMPGTPDSVLGKRKADLGTNGEGKKVKAY
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccagcagctgaagtagcagccgattttcgggacgcactgcaagacttgagg
atgaatagcaggcccgaaattagcaatctaaccctcatcgccaaagagaatacagagtac
gctgaagctatatccaatgagctccagaaacatatccaatcgactcgtcctgaatggaag
cttcccgctctttacgtgcttgattccattgtcaagaacgtcggaaccccatatactgtt
tacatcggtcgcaacctgtaccgaacattcatggatgcttatctggtcatggaccaggcc
acccgcaagaatatggaaggcctgctcaagacgtggaagatgcctgtgcccgagtctatg
gatccacgcccagtgttctcagccgacgtgacgcaagatatcgagaacgcactggctaag
tttcatgcagctcaacagcaggtccgaccgcaacatgcgcttccgcctcgtcctccatcg
ctcaacgtggcttggagaggtacatctacgccgccgcagaatggtccccgttatgctgcc
cccaatgacccgcgtgctcgaccgtcatacccatcgacccctcaatatggacctacagca
catgcccctacacccccggtggcctacgcgcagtctcagcagcctccttcgcccatgtcg
tccattgatttggctggactaaaggcggaagtcactcagctaattagcactacacagaac
acatttgctcaaaacccagctgatgcagccctgcgtacgaagctttcggcactcttatct
ctcaagcagattttggacacacagactctaccgccacaacaactggaagctgtacgtcaa
cagattcgagccctagcacctccgcccgctccaacgccctcgtttgcaccgtctacacca
gtatatcctccgcagcagacagcggcacccggttaccctgctcagtttcccgccgtgact
gcttcgccagtcaatgttccaccaaatgtagcacaacttcttgcgggctttataccacag
tcgacaccacaacctgccccgaccccgaccccaccagttctgaacctagcggaattgttg
aagcgtgtatcatcgcctgcacaatcgagttctgtaccagctccagctccattccagccg
ccgttccaagcattcccaccgcctatttctaccccagtacccgcgccccaatccgcccct
ccagcacagtctgccacaccaaccaccaacttggctgcgttgcttgcacaattcagcaaa
cctgctgctgcgccaccctcagtccagcctacgcctgttcaaagcactcctgtgcctcaa
cttccattgcaacctgcggcccccccaccagcccttggcagtgctgagtggcttctcaaa
gccctgagcagtgtatcaggtcccacgcctgtgaatggagtacctaatccacttcagcaa
ggaactgaacaatcagtagcgccggttggtttgctggaccaaatcgagctcactaccgca
tcgatgaagaaaccccgtcttcaccttatctcccatctgtacgaaaccaagcccaacatc
tgcgccacttgtggtcgccggttcgaaaatacggctgagggaaaagagaagaaagctcgt
cacatggactggcacttcaaggtcaaggacccagatgcggccaaacgaggtgtacatcgc
agctggtacattcctgagaaggaatggattgaatatcgcgaacttgacgaaaccgccccc
aaccagtccaaccacccctcttctggcaacaacgcggccaagccaaagaagcagaccaag
gaccggtatgtcagcgttccgcaggatgtgacacttcagcaagcaccttgcccgatctgt
caagaaaagtttgagacacagtggaacgtggaagcgaatgatttcgtatggatggacgcc
ctgagtgtgggcgggaaagtgtatcatgctacatgttttgaagagtacagcaagggaatt
ggtattgagatgcctggcacgccagactcagtgcttggaaaaaggaaggccgatcttgga
acgaatggagagggcaagaaagtcaaagcctattag
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integrated database retrieval system
