Coraliomargarita akajimensis: Caka_0096
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Entry
Caka_0096 CDS
T01204
Name
(GenBank) type III restriction protein res subunit
KO
K19789
DNA repair protein RadD
Organism
caa
Coraliomargarita akajimensis
Brite
KEGG Orthology (KO) [BR:
caa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caa03400
]
Caka_0096
DNA repair and recombination proteins [BR:
caa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
Caka_0096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
zinc_ribbon_2
DZR
AAA_22
AAA
zf-ribbon_3
AAA_16
zf-tcix
zf-RanBP
Motif
Other DBs
NCBI-ProteinID:
ADE53125
UniProt:
D5EL23
LinkDB
All DBs
Position
complement(107931..109667)
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AA seq
578 aa
AA seq
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MYQLRPYQQEAVDRTLQYFRKQRSPAVIVLPTGAGKSLVIAELAKIATGRVLVLAHVKEL
VEQNHLKYESYGLEAGVYSAGLHQKDSTQKVIFGSIQSVSKAKASFFNDFTLLVIDECHR
VGLQPDSQYAKVIEQLQRSNPRICILGLTATPYRLGLGWIYNTALRGETKTEEPRFFKYC
IYDLALEYMIRNRYLTRPVKVDIPVTAYDFSELTEGGANYTMEQVEAVLNQQRRLTPLIL
KNIIDITESDGRQGVMIFSATVKHAQEIMQHLPAGQARLVVGSTELAERDQIVEGFKQKA
FKYLVNVSVLTTGFDAAHVDVIAILRPTESISLYQQIIGRGLRLDSEKKDCLVLDYTGMG
HSIFSPEIGETKPASESVPVQVPCPQCGFVNDFWGILDDDGKLLEHFGRKCRGGHTDPQT
LKFTPCGYRFRFKICNQCGTENDIAARECHRCGGLLIDADEKLKQARLSKDAHVLTPDSI
EMLERTDKKGTSYLQVKYYDYDAQFVSELHYLNNPTSLKKFSINFLRSHLRTPELKLNIK
TVSDVLQIQPQLRMPAFVIARKQGKFWKVTEKIFSEEL
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaactcaggccctaccaacaagaagcagtggatcgtaccctgcagtacttcagg
aagcaacgcagtcctgcagtaatcgtcttgcccacaggggcgggtaagagcttggtcatc
gcggagctggcaaagatcgccacggggcgcgtcttggtactcgcgcatgtcaaggagctg
gtcgagcagaaccatctgaaatatgaaagctatggcttggaagccggcgtctattcggcc
ggattgcaccaaaaggatagtacgcaaaaggttattttcggcagcatccagtcagtttca
aaagccaaggcttccttcttcaatgacttcaccctactggtgatcgacgagtgccatcgc
gtcggcctacagcccgacagccagtacgcaaaagtcatcgagcagctccaacgcagcaat
ccgcgtatttgcattctgggcctgacagcgacgccctatcgtttgggactgggctggatc
tataacaccgccctgcgtggcgaaaccaagacggaagaaccgcgcttctttaagtactgc
atctacgacctggcgctggagtacatgatccgcaaccgctatctgacacgcccggtaaag
gtcgacattcccgtcactgcctatgacttctctgagctcactgaaggcggtgcaaactat
acaatggaacaagtggaagctgtgctcaaccagcaacgtcgcctcactcccctgatcctc
aagaacatcatcgacatcacggaaagcgatgggcgccagggggtgatgatcttcagcgcc
accgtaaaacatgcgcaggagatcatgcagcaccttcccgccgggcaggccagactggtg
gtgggaagcaccgagctggccgaacgggatcagatcgtagagggttttaaacagaaagcc
ttcaagtatctggtcaatgtctccgtgttaaccaccggtttcgatgccgcgcatgtcgat
gtgattgccatccttcgcccaactgaatcgattagtttataccagcaaataatcggccgc
ggtctacgcctggacagtgaaaaaaaggattgcctggttctcgactataccggcatgggg
cacagtatcttcagcccggaaatcggtgagaccaagcctgcctccgaatcggtcccggtt
caagtcccctgtcctcaatgcggcttcgtgaatgatttctggggcatccttgacgatgac
ggaaaactgttggagcactttggccgcaagtgtcgtggcggacacaccgatccgcaaacc
ctcaagttcacgccctgtggctatcgctttcgctttaagatctgcaatcaatgtggcact
gaaaatgatatcgccgcgcgtgaatgccatcgctgtggaggtctgctcattgatgcagac
gagaagcttaaacaagcaagactttccaaagatgctcatgtactcacacccgattccatt
gagatgctcgagcgcacggataaaaaagggacgtcctacctgcaggtaaagtactacgat
tatgacgcccagttcgtcagcgaattacactatctcaacaatccaaccagcctgaagaaa
ttctcgatcaactttctgcgctctcacctacgcacccctgaactgaagctcaacatcaag
actgtcagtgatgtcctacaaatccaaccgcagctccgcatgcctgcattcgtcattgcc
cgcaaacaaggcaagttctggaaggtcaccgagaagatattcagcgaggagttgtga
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