Chelonoidis abingdonii (Abingdon island giant tortoise): 116816778
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Entry
116816778 CDS
T07367
Symbol
HELZ2
Name
(RefSeq) helicase with zinc finger domain 2 isoform X1
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116816778 (HELZ2)
Enzymes [BR:
cabi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
116816778 (HELZ2)
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116816778 (HELZ2)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116816778 (HELZ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNB
AAA_19
AAA_30
ResIII
AAA_22
UvrD-helicase
UvrD_C_2
AAA_16
SLFN-g3_helicase
nSTAND3
UvrD_C
zf-C2H2_jaz
zf-met
Helicase_RecD
Bac_DnaA
OB_Dis3
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
116816778
NCBI-ProteinID:
XP_032622166
Ensembl:
ENSCABG00000000280
LinkDB
All DBs
Position
Unknown
AA seq
2827 aa
AA seq
DB search
MPAVNGLVPLTLDGLHKRLELCLVCSKCSVRENESTYGRREVEHRCMHEILLAQCRSKRS
QLWKKVGRRPGFPNPARYEVCRYYSPGSGCYKHRNQCTFATSKEEAIVWNFEREHDLERR
VLKAMVLQAQTAGSTKGLPSQEAPSAAGEIQSEFGGQFQEICKLCFYQSPQRISSGGLAG
LCEEHGAWKALLVHVVTDGRRKKQYTAVRPWPEFMSQLSYCMFVSRGNPCKHGAQRCNYA
HSEVEMAVWEAEQKRGLVRSDLLPAVVTGSENGDKPAQPQVQFYCRACLVTFSSQESFEN
HCSLVEHAQMVSADTMIQWAHRTPPYGLTTFTLCNRGDICEYGERCTKAHSVEELQEWIQ
RAKAAERNKKSARRDGLLSYQDRLIAEYKECRNEVFILSEQVDGVVVTCEQPMRVHSEDR
KMRYWWKFKVHSQMPLRHVALLKRDPGATFFLAGDGFPRGLTYIRGERLKALPSPPLSWL
VEVCMECCTFGVYEQWVVFDFGSRPVLVRKIQAKIGKRELPRHVPAGMEGSRFVNFQRWH
SGNRVIVPSVEMTSDEVDLLAKYKAPMLSLEFRPGSTVNTPITLLNYRERMHDFLFREEE
AEQTLIDKLNLQVTVSLTPMLQTLSMGMKFALPGELFAEVPTPCALTPDTNEGYLLSRSV
NTAFLAPDPPTDNRVYEVKVESKAITEKSIWLLIPKRCCSELGFQQGTSRKVEIQFQIDR
LQFRLWHYAVDQLLDERLILPDVAACSIPHSPTLLLSGNKKQMQAISFITGQATSTRQVP
PLLIYGPFGTGKTFTLAMATQEIIKQPNTRVLICTHTNSAADIYIREYFHEYVTNGHPGA
VPLRIKYTDRSISMTDPITQLYCCLSPDQRTFRQPTQAEIDRHRIIITTSMLSKNLRVPR
GYFTHILIDEAAQMLECEALIPLSYATFETRVVLAGDHMQVTPKLFCLGGEQSADHTLLN
RLFQYYQKEKHEVALKSRIIFNENYRSTAGIIEFVSKHFYVSKGNTIHASGNIPPHPEFH
PLMFCHVLGSTERDMAMTSWYNVSEIMQVIEKVQEMHQKWPDEWGARDLKRICVVSHGMQ
VNAIRQELRKKHLGEVAVENFENLPGREFRVIIISTVHTKESLLSFASPNMEFFNEARVL
NTIMTRAQSQVIVVGDAVALCSYGQCSKVWKRFLQECIEKGNVTPETLTLEQIKQAVSDK
QSWIRGSTEQQQQLREEDDDSDTDSWTSELNNANPDDPILQELLDESKNVQVTVSEEGLL
NVNSEASAQQNGWLEYVNFSSHTMQEYLRMHPKMYKRCELVKEGFDRASAFAFDDSPPLN
IQIKGRVHCGMAFTGDEVLVELLQTCAPEGGTLRPQGRVVGVLTRAERERTFICTMDEFD
PRVMIPIDHTVSKIFVPGLKEKPSVVPIRKLVKGKYQVVKCEKINQEMKRSQLFCVQIIS
WREGFYYPLGIVTDILPMALTLEEGLKILDLEYGLTKKYPSKVTKELAKITSSKSNPPKE
NRRDCRGYLTFTVDPPGSKDLDDAISVRDEGSYYEIGIHIADVAGFVPKDSALDMEAKKR
GITYYAPGKEPLCMFPAQISQDLCSLLPQKDRHVISLFVTVEKTTDRVMKGNFALSTIHS
DRQLSYEEAESIIKNHDSGEAKALRFDTLEDCIAVAYHFSRVHRQFRLQEDCYYDRLDEE
STPGNRGSHQMIEEFMIMFNSFVAEFLTNKGHTKNVTPLRCQMEPNPQQVAQMKNKYSHI
IPLSIHLSHHLGALPAGPAPAGWGEFSLLTPLWEHLQSAVDTHDVHKMLDLIATDDIHPK
LAPIVLEFRRLLSRSYFSRSNSTAQSKAGHYSLHVDSYTWASSPIRRYLDVVVQRHLHSV
LCKKPVLYSLEDMEFLCHDFNRKNLRAVTYEKRAHSLQMATRLRCQVLQKIAFVVSVEGI
DRFFKALFPMNKETLPDPQAINYRALQLVEQPLFNQARNSMRLTWRRRTYSVVSSKDLTP
RSSPLRDRHITLFSAQVWEDVLAAIRKEEFETMIALLRQGRATRQRQMGRMERSDCSHYM
VLSLELSAGDAVQLQLTTGVHRGFLVPSVQLWSVTPGFDVCLEHTEKPINCFSNYATHAS
KDKYKNPSDYSRVWQPLSAMESASCAVAENDSIVLQDVKITWDKQRNSKGQLQGTFSLTK
SFLEECAIDVDFNHCYLCIRLEGLTLSGCHHDEACLSHSLQKLSLSNQSVAGGSFMVDPA
TYTWVAHGLSEEFSDNEKLDRSGLKTVNFYIHFLSMETVPAEISQDSARFTVEIIPKMLP
DVRKENAIWKLKNASALAKSIALGQEPPQTAEKKSKLLTQKTFDISGSLRKLNQSQNKAI
LDALRKPFTLIQGPPGTGKTVVGVHIVYWFNKLNEEKLEKEPSLDDAEKARKCILYCGPS
NKSVDVVAEMLLKMKGNLKPLRVYGEAMESMEFPYPGSSRHFSRKALRDAKPKPELSEII
LHHRIRQPSNPFWRKIRDFDAKVKREEPISEEEVKKYKSLLSEARGHELQLHNVILCTCS
AASAAYLVDLLNVKQILIDECAMSTEPETLIPLVSYTTAEKVVLLGDHKQLRPVVHNDFC
KSLGMETSLFERYQDQAQMLDTQYRMQKDICRFPSQEFYRSKLTTCPELKRPPSALEHGY
KSSCPIIFGHIEGKEQSLMVSTEEGNENSRANLEEVEQVVRIAKQLTLDGTIKPVSVAIL
SPYNAQVSEINKRLTQEGVRGMTVCTIMKSQGSEWKYVILSTVRSCSRSDIDRKPTKSWQ
KKFLGFVIDPNQVNVAITRAQEGLCIIGNRYLLESNPLWRRLLEHYKRMGCSTLAHDIRV
RKKSALR
NT seq
8484 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgttaacggcctcgtccccctgacgctggacggcctgcacaagcggctagag
ctgtgcctggtgtgctccaagtgcagcgtgagggagaacgagagcacctatgggcggaga
gaggtggagcatcgctgcatgcatgagatcctcctggcccagtgcagaagcaagaggagc
cagctatggaagaaggtaggcaggaggccgggcttcccaaacccagcacgttacgaggtc
tgcagatactactcccccggctcagggtgctacaagcacaggaaccagtgcacctttgcc
accagcaaggaggaggcgatagtgtggaatttcgagagagagcacgacctggagcggcgt
gtgctgaaagccatggtgctccaggcacagacggcaggcagtacaaaaggcctcccaagc
caggaagcgcccagtgctgcaggtgaaatccagagtgagtttggggggcagttccaggag
atctgcaaactctgcttttaccaaagtccccagagaatatcctctggggggctggctggg
ctctgtgaggagcacggtgcttggaaagctctcttggtccacgtggttaccgacggaagg
aggaagaagcagtacacggcagtcaggccatggccggagttcatgtcacagctcagctac
tgcatgttcgtctccagaggcaacccgtgtaagcatggggcccagcggtgtaactatgcg
cacagcgaggtggagatggcggtgtgggaggcggaacagaagcgtggcctggtgcgctcg
gacctgctgccggctgtggtgacgggcagcgagaacggcgacaagccagcgcagccccaa
gtccagttctactgccgggcctgcttggtgaccttcagctcccaggagagcttcgagaac
cactgctccctggtggagcacgcacagatggtctcagccgacaccatgatccagtgggct
caccgcacgcctccctatgggctgaccacattcacactgtgcaacagaggggacatttgc
gaatatggcgaacggtgcaccaaggcccattctgtggaggagctgcaggagtggatccag
agagcgaaggctgctgagaggaacaagaaatctgccaggagagatgggctcctctcctac
caggaccgtctaattgctgagtacaaggagtgccgtaacgaagtgttcattctttctgag
caggttgatggcgtcgtggttacctgcgagcagcccatgcgggtgcattcagaggacagg
aagatgcgatactggtggaagttcaaagttcactcccagatgcctctgaggcatgtggca
ttactgaagagagatcctggagccaccttcttcctggcaggggatgggttcccacggggc
ctcacctacatccggggagagcggttgaaggctctgccgtcaccaccgctctcgtggctg
gtggaggtctgcatggagtgctgcacgttcggagtctatgagcagtgggttgtctttgac
ttcggcagccgccccgtcctggtgcggaaaatccaggccaagatcggcaagcgggagcta
ccccggcacgtcccggctggcatggagggcagccgctttgtgaactttcagcgctggcac
agcggcaaccgggtgatcgttcccagcgtggagatgaccagtgacgaggtggacctgcta
gccaagtacaaagcgccaatgctttccctggagttccggcctggcagcactgtgaacacg
cccatcaccctcctcaactacagggagaggatgcatgactttctgttccgagaggaggaa
gctgagcagaccctcattgacaagctcaacctccaggtcaccgtctccctgaccccgatg
ctgcagaccctgtccatggggatgaagttcgctctccctggtgagctctttgctgaagtg
ccgaccccttgtgccctgacgccggacaccaacgaggggtacctgctgagccggtctgtg
aacactgctttcctggcacctgacccacccacagacaaccgggtgtacgaggtcaaggtg
gaaagcaaggccatcacggagaagagcatctggctcctcatccccaaaagatgctgctcc
gagcttggcttccagcagggcacctcccgcaaggtggagatccagttccagatcgaccga
ctgcagttccgactgtggcactacgcggtggaccagctgctggacgagcggctgatcctg
cccgacgttgcagcctgttccatccctcattcccccacgctgctgctgagcgggaacaag
aagcagatgcaggccatttccttcatcaccggccaggccaccagcaccaggcaggtccct
cctcttctgatctatgggccttttggcacagggaagaccttcaccttggccatggccacc
caggaaatcatcaagcagcccaacacacgagtgctgatctgcacccacaccaacagtgcg
gctgacatctacatccgtgagtacttccacgagtatgtcacaaacgggcaccctggggca
gtcccgctgaggatcaaatacacagaccgttccatcagcatgaccgaccccatcactcag
ctgtactgctgcctttctccagaccagaggaccttcaggcaacccactcaagcagagatt
gacaggcaccgcattatcatcaccacatccatgctgtccaagaacctgagggtgccccgt
ggatattttactcacatcttgatagatgaggcagctcagatgctggaatgcgaagctctg
atcccgctctcgtatgctacttttgagacccgagttgtcctagctggggaccacatgcaa
gtgacccctaagctgttctgcctggggggtgagcagtcggccgaccacaccctgctgaat
cgcctcttccagtactaccagaaggagaaacacgaagtagctctgaaaagcaggatcatc
ttcaacgagaactaccgctccactgcgggcatcatcgagtttgtctccaagcacttctac
gtcagcaaaggcaacaccatccatgccagtggcaacatcccgccccaccctgagttccac
ccgctaatgttttgccatgtgctcggctcaaccgagcgggatatggccatgacgtcctgg
tacaatgtctcagagatcatgcaggtgatcgagaaagtgcaagagatgcaccagaagtgg
ccagatgaatggggagcccgggacctgaagagaatctgtgtggtctcccacggcatgcag
gtcaatgcaataaggcaggagctgaggaagaagcacctgggagaggtggcagtggaaaac
ttcgaaaacttaccagggagggagttccgggtcatcatcatcagcacagttcacaccaag
gaaagcctgctcagcttcgcctcccccaacatggagttcttcaacgaagcgagggtgctg
aacaccatcatgacgagggcccagtcgcaggtcatcgtggtaggagatgctgtggccttg
tgttcctatggccagtgcagcaaggtctggaagcgcttcctccaggagtgcatcgagaag
ggcaacgtgactccggaaacgctgacgctggagcagattaagcaggcagtgtcggacaag
cagagctggatccggggaagcacggagcagcagcagcagctgcgagaggaggatgatgac
agcgacacggattcctggacctctgaattgaataatgcaaatcccgatgatcccattctc
caggagctcctggatgagagcaagaacgtccaggtgaccgtttccgaagaagggttgctg
aacgtgaactctgaggcgtcggcccagcagaatggctggctggaatatgtcaacttctcc
tctcacacaatgcaggagtatcttcgcatgcaccccaaaatgtacaagaggtgtgagctg
gtcaaagaagggtttgacagagcatctgccttcgccttcgatgactcgcctcccctcaac
attcagatcaaaggcagagttcactgtggcatggctttcactggcgacgaagtgctagtg
gagctccttcagacctgtgcccctgagggaggcaccctccgtccccaggggagagtggtg
ggagtgctgacgcgggccgagcgagagcggaccttcatctgcacgatggatgagttcgac
ccccgcgtgatgatccccattgaccacaccgtctccaaaatattcgtcccagggctgaaa
gaaaaacccagtgtcgtccccatccgcaaactggtaaagggaaagtaccaggtggtcaag
tgtgagaagataaaccaggagatgaaaagaagtcagctcttctgtgtccaaattatctcc
tggcgggaaggtttttactaccctctgggcatagtaacagacatcctgcccatggctttg
actctggaagaaggcttgaagatccttgatttggagtacggtctgacaaaaaagtaccca
agcaaggtgaccaaggagctggccaaaattacctccagcaaatccaaccctcccaaggag
aatcggagggactgccggggctacctgacttttactgttgaccctccaggctctaaagat
ttggatgatgccataagtgtccgagatgagggcagttattacgagattgggatccacatt
gccgacgtggctggctttgttcccaaagacagtgctttggatatggaggcgaagaaacga
ggcattacttactatgcccctggtaaggaaccactatgcatgtttccagcccagatcagc
caagacctctgcagcctcctgccccaaaaggatcgccacgtgatctccctgtttgtcact
gtagaaaagacgacagacagggtgatgaaagggaactttgccctgtccacaatccactcg
gaccggcagctgtcctatgaggaggcagagagcatcattaagaaccatgacagtggggaa
gcgaaggcccttcgctttgacacgcttgaggactgtatagctgtggcttatcacttctcc
agggtccatcgacagttcaggctgcaggaagactgttactatgaccggctggatgaggaa
agtaccccgggcaacaggggatcccaccagatgatagaggagttcatgatcatgttcaac
agcttcgtggctgagtttctaaccaacaaaggccacaccaagaacgtcactcctctccgg
tgtcaaatggagcccaacccccagcaggtggctcagatgaagaacaaatacagccacatc
atccctttgtctattcacctctcacaccacctgggagctctgcctgctggcccagccccc
gctgggtggggtgagttcagcctcctgaccccactgtgggagcacctccagtcagctgtg
gacactcatgatgtccacaagatgctcgacctcattgctaccgatgacattcacccgaag
ctcgcccccatcgtcctggagttcaggaggctgctgagccgctcctatttcagtcgctcc
aactcgactgctcagtctaaggcaggacattactccttgcacgtcgactcttacacctgg
gcctcctcccccatccgccgatacctggatgtcgtggtccagcggcaccttcattccgtg
ctctgcaagaagccagtgctgtactctttagaggacatggaatttctctgccatgacttc
aacagaaagaacttacgggcagtaacctacgagaagagggcccattccctgcagatggcc
acccggctgaggtgccaagtactccagaagatcgcattcgttgtgagtgttgagggaatt
gataggttctttaaagccttgttcccgatgaacaaggagacccttccagatccccaagcg
atcaactatcgggctcttcagttagtggaacagcccttgtttaatcaagcgcggaacagc
atgaggctgacatggaggcggcgaacgtactccgtggtaagctcaaaggatctcaccccg
cggtcctcgccacttcgggaccgccacatcaccctcttcagcgctcaggtgtgggaagac
gtgctggcggccatcagaaaggaagagtttgagaccatgattgctctcctcagacagggc
cgggccacgcgccagaggcagatggggagaatggagagaagcgactgctcgcactacatg
gtgctgtctctagaactgagtgctggggatgctgtgcagctgcagctcaccacgggggtt
catcggggatttctagtgccttctgtgcagctgtggagtgtgacgccaggtttcgacgtc
tgtttggagcacacggaaaagccaatcaactgcttctcaaattatgccactcacgcgtcc
aaggacaagtacaagaatccatcggactacagcagggtttggcagccactcagtgctatg
gaatctgcttcgtgcgctgtggcagaaaacgactccattgtcctgcaggatgtcaaaata
acctgggataagcaaaggaacagcaaagggcagctgcaggggactttctccttaaccaaa
agcttcctagaggagtgcgccattgatgtagacttcaaccactgttacctgtgcatccgg
ctagagggtctgacactcagtggatgccatcacgacgaggcatgtcttagccacagcctc
cagaaactcagcttgtccaaccagagcgtggcaggtggcagcttcatggttgatcctgct
acatacacttgggtagcccatgggctgtccgaagagtttagtgacaatgagaaactggac
agaagtggtctgaagactgtgaatttttacatccattttctgtccatggagacggttcct
gcggagatctcccaagactcagccaggtttacggtggagatcattccaaagatgcttccg
gatgtccggaaggagaatgcaatctggaaactgaaaaatgcctctgcgctcgccaagagc
atagcgctgggccaggagcctcctcagacagcagagaagaaatccaaactcctgacacaa
aaaacctttgatatctctgggagcctgaggaaactcaaccaaagtcaaaacaaggcaatc
ctagatgctctgagaaaacccttcactctcatccagggaccaccaggcacggggaagact
gtggttggggtccatattgtctactggttcaacaagctgaatgaggagaagctggagaag
gaaccatctctggatgatgcagaaaaagcaagaaaatgcatcttgtactgtggcccatcc
aacaagtctgtcgatgttgttgcagagatgctgttgaagatgaaggggaacctgaagcct
ctgagggtttatggcgaggcgatggagtcgatggaattcccctaccccgggagcagccgg
cacttctcccggaaggctctgcgggatgcaaaaccgaagccagagctcagtgaaataatt
ttgcatcaccgaatccggcagccgtccaatcctttttggcgaaaaatccgtgactttgat
gcaaaagtgaaaagagaagagccgatatcagaagaggaggttaagaagtacaaaagcctg
ttgtcagaagcccgtgggcatgagctgcagctccacaatgtgatcctgtgcacgtgctct
gctgcctctgcggcctaccttgtggacctcctgaacgtcaagcagatcctcattgatgag
tgcgccatgtccactgagccagagactctcatacccctggtcagctacacgacggcggaa
aaggttgttttgcttggggaccataagcagttgcggcctgtggtccacaacgatttctgc
aagagccttggcatggagacgtccctctttgaacgttaccaggatcaagcccagatgctg
gacacacagtaccgcatgcaaaaggacatctgcaggttcccatcccaggaattttacagg
agcaagctgacaacctgccctgagcttaaacgacctcccagcgcactcgaacacggatac
aaaagcagctgtccaatcatcttcggacacatagagggaaaggagcagagtctgatggtc
tccaccgaggaggggaacgagaattccagggctaacctggaagaagtggaacaggtggtg
aggatagcaaagcagctgaccctggatggcaccatcaagccagtgagtgttgccatcctg
agcccgtacaacgcccaggtgtctgagatcaacaagcgtctcacccaggagggtgtccgc
gggatgacggtttgcaccatcatgaaaagccaagggagtgaatggaagtacgtgatcctg
tccactgtacgctcctgctcgcgatcggatattgataggaaacccaccaaaagctggcag
aagaagtttctgggatttgttattgacccaaaccaggtcaatgtagccatcactcgggct
caagaggggctgtgcattataggaaaccgttatctcctggaatccaaccctttgtggaga
agactgctagagcattacaaacggatgggatgcagcactttggctcacgacattcgagtc
aggaaaaagtcagcccttcgttga
DBGET
integrated database retrieval system
