Chelonoidis abingdonii (Abingdon island giant tortoise): 116823334
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Entry
116823334 CDS
T07367
Symbol
UPF3A
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03013
Nucleocytoplasmic transport
cabi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116823334 (UPF3A)
03015 mRNA surveillance pathway
116823334 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116823334 (UPF3A)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116823334 (UPF3A)
mRNA cycle factors
P-body specific factors
116823334 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
116823334
NCBI-ProteinID:
XP_032633707
LinkDB
All DBs
Position
Unknown
AA seq
495 aa
AA seq
DB search
MPVPLQSAAAELQKHQRXNQNPSSYTCYEELNPICAIEATTKPQYTLDRLATIHSELGMP
SETPQEALNSQAGDDSSRQPRFLQHSFQSAGDASPVPNQRQYGRVDLIHLYPHLYSRAYI
NFRNPDDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPE
YRKFLESYCADEEKICANPETLLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKR
EERRRRELEKKRLREEEKRKRREEERRKRKEAEKQKKIAEKEIRIKLLKKPEKGDDLASE
TNKEKGEEADIEESKWEKSPGSGSIKSKPLEGSPKELKEKSQNDSDKEQMDLERRFREKD
LERQRYRLDDGRKHRAHYEFDKFMRRNEEELKWGKGYSQDRGKKGNHNYSFTVEAVDKLG
KEDKCDDMASKKERIRNKDRPAMQLYQPGARIRTHTGSTSKIYECSGKSSEDACDRKCEV
DNSTGGGSEKSEEAE
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgccactccaaagtgctgcagcagaattacaaaaacaccaaagancaaatcaa
aatcccagttcatacacctgctatgaagaactgaatccgatttgtgccatagaggccacc
acaaaaccccagtatactttggaccgtttggccacaatccacagtgagctaggcatgcct
tcagaaaccccacaggaagccttgaactcccaggcaggagacgattcctctagacaacca
agatttcttcagcactccttccagtcagccggagatgcctccccagtgcccaaccagaga
caatatggcagagtggacctcatccatctttatcctcatctctactcaagagcatacatt
aattttagaaatcctgatgacatccttctttttagagatcgttttgatggctatgtcttc
attgataataaaggtttggaatatcctgctgtggtagagtttgctccattccaaaagatt
tcaaaaaagaagcttaagaaaaaagatgcaaaagctgggagcattgaggatgatccagaa
tatagaaaatttttagaaagttactgtgccgatgaagagaaaatctgtgctaatcctgag
actctgttgggagagattgaggcaaaaacaagggaacttattgctagaagaacaacacct
cttttggaatatattaaaaatagaaaattagaaaagcagaggatacgagaagaaaaaagg
gaagaacgaaggaggagagaattagaaaagaaacgtctgcgagaggaagagaaaagaaag
cgcagagaagaagaaagacgtaaaagaaaagaagcagagaagcaaaagaaaattgctgaa
aaagaaataaggatcaagcttcttaaaaagcctgaaaaaggagatgacctggccagtgaa
acgaataaggaaaaaggagaagaagctgatattgaagaaagcaaatgggaaaaatcacct
ggatctgggagtataaaatccaagccattggaaggctcaccaaaggaacttaaggaaaag
tcacaaaatgatagtgataaagagcaaatggatttggagagaagatttcgagaaaaagac
cttgaaagacaaagataccggttggacgatggcagaaagcatagagctcactatgaattt
gacaagtttatgagacggaatgaagaagagctgaaatgggggaaaggatacagccaagac
agagggaagaaagggaaccacaactacagcttcactgtggaggccgtagacaaactgggt
aaagaggacaagtgtgatgacatggcatccaaaaaggagcgcataagaaataaggatcgt
ccagccatgcagttataccagccaggagctcgcattcgaacacatacgggatctacaagt
aagatctatgaatgcagtgggaagtcctctgaagatgcctgcgatagaaagtgtgaggta
gataattcaactggaggtggttctgagaagagtgaagaggcagaataa
DBGET
integrated database retrieval system
