Chelonoidis abingdonii (Abingdon island giant tortoise): 116826195
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Entry
116826195 CDS
T07367
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03013
Nucleocytoplasmic transport
cabi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116826195 (UPF1)
03015 mRNA surveillance pathway
116826195 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116826195 (UPF1)
Enzymes [BR:
cabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116826195 (UPF1)
5.6.2.5 RNA 5'-3' helicase
116826195 (UPF1)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116826195 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
116826195 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116826195
NCBI-ProteinID:
XP_032638661
Ensembl:
ENSCABG00000016111
LinkDB
All DBs
Position
Unknown
AA seq
1090 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGHGGPGQGPP
GPGQGPLGQIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHAC
SYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLEC
YNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLV
KIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQ
NIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEIC
LRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRM
QSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVL
QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR
LCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAE
RELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDH
CQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQN
GVTFSLVTSKIKQKTSLPRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQ
FSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARY
GVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGAR
FMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLV
MPPMPPPGYFGQPNGPAAGRGTPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQP
FSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQ
HGGVTGLSQY
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagactctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggacacgggggcccggggcagggcccgccg
ggcccggggcaggggccgctcggacagatcgaggcacaggttaatggtcctgatgggatc
ctccaaaatggtgcagtggatgataatgtagctaaaaccagtcaactgcttgcagaatta
aactttgaagaagatgaagaagatacctattacaccaaggatcttcctgtgcatgcttgc
agttactgtggcatccatgacccagcttgtgtggtttactgtaataccagcaagaagtgg
ttctgtaatgggcgtggaaatacatctggcagccacattgtaaatcatctcgtcagagca
aaatgtaaagaggtgactcttcacaaagatggtcctttgggagagactgtcttggagtgt
tataattgtggatgtcgtaatgtgttcctccttggcttcattccagctaaggctgactcg
gtagtcgtattattatgcaggcaaccgtgtgccagtcagagcagtttaaaggatattaat
tgggacagctcacagtggcaacctcttatccaagaccgttgtttcctttcctggctggta
aagattccttctgaacaggagcagttgagagcacgtcagattacagctcaacaaattaac
aaactggaagaactctggaaagaaaatccatctgcaacccttgaagacttggaaaaacct
ggtgttgatgaagaaccacagcatgtcttacttagatatgaggatgcttatcaataccaa
aatatttttggccctctagtcaagcttgaagcagattatgacaagaaactcaaggagtcc
cagacccaagataacatcacagtgagatgggacctgggcttgaacaagaagagaattgct
tacttcactttgccaaagactgactcagatatgcgtcttatgcagggagacgaaatctgc
ctgagatataaaggagacctggcccctttgtggaaaggaattggtcatgttattaaagtt
cctgataattatggtgatgagatagctattgagttgaggagcagtgttggagcacctgtg
gaggttactcataacttccaagtggattttgtgtggaagtccacttcatttgacagaatg
cagagtgctttaaaaacgtttgccgtggatgaaacttcagtgtctggctacatctaccac
aaattgttaggtcatgaggtagaagatgtgattattaaatgccagctgccaaagcgtttt
acagcgcaaggacttcctgacctcaatcattctcaggtttatgctgtaaagactgtcttg
cagcgtcctctgagccttatccaaggtccccctggtacaggaaaaactgtgacatcagcc
actattgtctaccatttagctaggcagggcaatgggcctgtgttagtttgtgccccaagt
aacatagctgtggatcagctcactgagaagatccatcagacagggctaaaagtcgttcgt
ctatgtgctaaaagccgcgaggcaattgattctcctgtatctttcctggctttgcacaac
cagattagaaacatggatagtatgcctgagcttcagaaactgcagcagctgaaagatgaa
actggagaattgtcatctgctgatgagaaacgctatcgtgcactgaaacgaacagcagag
cgtgaattacttatgaatgcagatgttatttgctgcacgtgtgtgggagcaggtgaccca
agacttgcaaaaatgcagtttcgttccattttaattgatgaaagcacacaggctactgaa
ccagagtgtatggtgccagttgttctgggagccaaacagctgatccttgttggtgatcac
tgccagcttggtcctgtcgtgatgtgtaaaaaagctgcgaaggcaggcctgtctcaatcc
ctttttgagaggcttgtggtgttgggtatccgtccaattcgcctgcaagtgcagtatcgt
atgcaccctgcacttagtgcttttccgtccaacatcttctatgaggggtcactccagaat
ggtgttacgtttagtttagtgacttcaaaaataaaacaaaaaacctctcttcctaggacg
gaagctgctaatgtggagaagataactacaaagttattgaaagctggtgccaaacctgat
cagattggcattataactccctatgagggccagcgctcttacctggtacagtacatgcag
ttcagcggttccttgcatacaaaactctatcaggaagtggaaatagcaagtgttgatgct
ttccaaggacgagagaaggactttattatcctttcttgtgtaagagccaacgagcaccaa
ggaattggatttttaaatgatcccagacgtcttaatgtggctctcaccagagcaagatat
ggagtaattattgttgggaacccaaaagctctgtctaaacaaccactttggaatcacctg
ctgaactactacaaggagcagaaggtactggtagagggaccactaaacaatctccgagaa
agccttatgcagttcagcaagcctcgtaaacttgtcaataccatcaacccaggagcccgt
ttcatgactactgccatgtatgatgcacgtgaagctattattccaggatcagtctatgac
cggagcagtcaaggacgcccatcgaacatgtacttccaaacacatgatcagattgggatg
attagtgcgggacccagccatgtcactgctatgaacattcctatccctttcaaccttgtg
atgccaccaatgccaccaccaggatattttgggcagcctaatggaccggccgcaggacgt
gggacacctaaaggaaagactggtcgtggtgggcgccagaaaaatcgttttgggattcct
ggaactagccagtcaaaccttccaaacagtcaagcgagtcaagatgtggtgtcccagcca
ttctcccagggtccactgactcagggttatatctccatgagtcagccatcacagatgagc
caaccaggactctcccagccagaattatcacaggacagttaccttggtgatgagtttaaa
tctcagattgatgtggcgctgtcgcaggattctacttaccagggtgaacgtgcatatcaa
catggtggagtgacaggactgtcacagtattag
DBGET
integrated database retrieval system
