Chelonoidis abingdonii (Abingdon island giant tortoise): 116833095
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Entry
116833095 CDS
T07367
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116833095 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cabi03400
]
116833095 (LIG4)
Enzymes [BR:
cabi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116833095 (LIG4)
DNA repair and recombination proteins [BR:
cabi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116833095 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
RTT107_BRCT_5
Ribosomal_S5_C
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
116833095
NCBI-ProteinID:
XP_032650218
Ensembl:
ENSCABG00000011980
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MSSSPTSQSSPKRTVASVVPFADLCSILERIQKCKSRPEKTKYFKEFLDSWRKFHDALHK
KEKDVSDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTP
TGSRGDTGDFAMIAYFVLKPRCPKQGRLTIQQVTEFLDSVASNNAAKRKDLVKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGISQQTIFSLFHPDAAELHNFTTDLEKVCRQLHDPSVSL
SNASIMLFSAFKPMLAAIANVQQIEKQMNYRSFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKNSIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSDLQTCFCVFDVLMVNDQKLGHEILSKRYEILNELFTPITGRIHIVHKTQASTRKEVV
DALNEAIDNREEGIVIKDPMSFYKPDKRGEGWLKIKPEYVNGLVDELDLLIIGGYWGKGL
RGGMMSHFLCAVAESSPPGEKPSVFYSICRVGSGYTMKELYDLGLKLAKHWKPYRKRDPP
CNILCGTEKPEVYIEPCNSVIVQIKAAEIVTSDMYKTDCTLRFPRIEKIREDKEWHECMT
LDFLEQLRGKASGKLASKHLDMGGDEPQEKKRKTVPKIKKIIGIMDHFKAPDLSNVNKIS
NIFEDVEFCVMTGTENHSKSELESKVAESGGNVVQNPGPDTYCVIAGIENVRVKNIISSN
KHDVVRAEWLLQCFKTKMFVPWQPAFMIHMSPDTKQHFACEYDRYGDSYTADTDVIQLKE
VFSRINNKNDEKMPLDMIADLEERYLWNSSPLCMFRQNTIYLDLYAVVNDPSTKTHGTML
SIRALELRFHGAKIVSELKEGVSHVIMGEDHTHVKEIKALRRTFEKKFKILSELWVTDSI
KEEKLQNENPYLI
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctcacctacttcacaatcttcccctaaacgaactgtggcctcagtagttcct
tttgcagatctgtgttcaattttagaacgaatacagaaatgtaaatcccggccagagaaa
accaagtatttcaaggaatttttagattcatggaggaaatttcatgatgctcttcataaa
aaagagaaagatgtctcagactctttttatccagcaatgcgacttattcttccacaattg
gagagagagagaatggcttatggaattaaagaaaccatgcttgctaagctctatattgaa
ctgctcaatttacccaaagaaggaaaagatgccctaaaacttttaaattatagaacacct
actggctcccgtggagatactggagactttgcaatgattgcctattttgtactgaaaccg
aggtgcccaaaacaaggcagactgaccatacaacaggtgactgagttcctggattcagtt
gctagtaataatgctgccaaaaggaaggacctagtaaagaaaagtcttcttcagttaata
actcagagctcagcacttgaacaaaagtggctgatccggatgattataaaggatctaaaa
cttggtattagtcagcaaaccatattttcccttttccatcctgatgctgctgagttacac
aatttcacaactgacctggagaaagtttgcagacaactgcatgacccttctgtatcactc
agtaatgcctccatcatgttgttttctgcctttaaacctatgcttgctgctattgctaat
gtccagcaaattgagaaacaaatgaactaccgaagtttttacatagaaactaaactagat
ggtgaacgtatgcagatgcacaaagatggagatgtatacaagtatttctctcgtaacggg
tttgattatactcagcagtttggtgcttctccccttgaaggttcattaactccatttatt
cataatgtgtttaaaaatagtatacaaaactgcattcttgatggtgaaatgatggcctac
aatcccaatacacaaacttttatgcagaagggaaacaaatttgacataaaaagaatggta
gatgattctgatctgcagacatgcttttgtgtgtttgatgtattaatggttaatgatcag
aagttgggtcatgagatactaagcaaaagatatgagattctaaatgagctgtttacacca
ataacaggcagaatacacatagtgcataaaacacaggctagcaccaggaaagaagtagtt
gatgctctaaatgaagcaatagataacagagaagaaggaatcgtgataaaagatcctatg
tccttttacaagccagacaaacgtggggaagggtggttaaaaataaaaccagagtatgtc
aatgggctcgtggatgaactagacctattaattattggcggttactgggggaaaggtttg
cgtggtggtatgatgtctcactttttgtgtgctgttgctgagagttcccctcctggtgaa
aaaccatctgtcttttattctatttgtcgtgttggttctggttacactatgaaggagcta
tacgatcttggtttgaaattggccaaacactggaagccttaccgtaaaagagatcctcct
tgtaatattttatgtggaactgagaagcctgaagtctacatagagccttgtaactcagtc
atagttcagattaaggcagcagagattgttactagtgatatgtacaaaactgattgcact
ttgcgattccctcgaattgagaaaataagagaggacaaagagtggcatgaatgtatgact
ttggatttcttagaacagctcagaggtaaagcatcagggaagttagcatctaagcacctt
gatatgggtggtgatgaaccacaagaaaagaaacggaaaactgtaccaaagattaagaaa
ataattggaatcatggatcattttaaagcccccgatctttccaatgtaaataagatttct
aatatatttgaagatgttgagttttgtgttatgactggaacagaaaaccattcaaaatct
gaactggaaagtaaagtagcagaaagtggtggtaatgtggtgcaaaatcctggaccagac
acttactgtgttattgcaggaattgagaatgtcagagtaaaaaatattatatcttccaac
aagcatgatgttgtgagagcagagtggcttttacagtgttttaaaacaaaaatgttcgta
ccatggcagcctgccttcatgattcacatgtctccagatacaaaacaacattttgcatgt
gagtacgatcgttatggtgacagctacacagcagatacagatgtgatccaactaaaggaa
gtattctcaagaattaataataagaatgatgagaagatgcctctggacatgattgctgac
ttagaagaacgttatttgtggaatagctctccactctgtatgttcaggcaaaataccatt
tatctggacctttatgctgttgttaatgaccccagtaccaagacccatggaacaatgcta
tcaattagagctttggagctccgttttcatggagcaaaaatagtctcggagctaaaggag
ggcgtgtcccatgtaattatgggagaagatcatactcatgtgaaagagataaaagcactt
aggagaacatttgagaaaaaatttaaaatcctatctgagctgtgggtaacagattcaata
aaggaggagaagttacagaatgaaaatccatacctaatttaa
DBGET
integrated database retrieval system
