Chelonoidis abingdonii (Abingdon island giant tortoise): 116835207
Help
Entry
116835207 CDS
T07367
Name
(RefSeq) collagen alpha-1(XXVII) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116835207
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cabi00536
]
116835207
Glycosaminoglycan binding proteins [BR:
cabi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116835207
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
GH131_N
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116835207
NCBI-ProteinID:
XP_032653746
LinkDB
All DBs
Position
Unknown
AA seq
1746 aa
AA seq
DB search
MEPESEPVSRLRATAAARGGSLFLWTVLYFTCFLGFAQGSSEDVDILQRLGLAGKKPLST
WSSSHSVPQGVIPFKSGVIFTQRARIEVPTSTIIPAAFGTDLALVLSLCSHRINNAFLFS
VKSKKKKLQLGVQFIPGKVIVYVGHKRSVYFDYNVHDGHWHNMAIDIRGQMVTLFTSCGK
QRLHADLHFKKDEALDPQGSFLLGKMNQHSIQFEGAICQFDIYPSAKAAHNYCKYLKKHC
RQADTFRPNLPPLVPLLPRDPSASPMAPLQPKFLLQGLKNLTTVIPALELIKITTPPKTP
VTVSTTLVPYKLPSPGSTTKAAKVTIMQSTIPSNTDMQLPVHSHSQTTTAALRISQTSSN
ASSQKHSFPTVRNILPAGQNFTAISRKELEQETKKMINQKTSTKPSETPSTVKPTRKKIE
NTSKDVHPMTMKQNPENLTSGPISKMLLPLPTRKSVPSLVPLLYTKSTPGFVHRTSRTSV
QAFNLTTPAAVDGFQVFDPVGPTLFPFLLGLPGLKGNQGPLGPPGLPGLPGPPGKRGPRG
PPGPHGNPGRPGLPGPKGQKGDPGLSPGKARNGEKGDMGLPGLSGLPGPSGRKGYKGYPG
PPGHPGDQGERGPDGSPGAKGYPGRQGLPGPIGEAGPKGSRGYIGLPGLFGLPGPDGERG
IPGVPGKRGKMGRPGFPGDFGERGPPGIDGNPGELGAPGPPGVHGLIGDMGALGPIGYPG
PKGLKGLMGNPGEHGLKGDKGDQGLPGVPGDIGFQGDKGSQGFPGIPGARGKPGPPGKFG
DKGPVGFPGPPGPEGFPGDIGTPGQNGPEGPKGKPGARGLPGPRGQPGQEGDEGPIGPPG
SPGPEGRPGRKGFPGKPGPDGSKGEPGHPGRTGKVGEQGLMGFIGPVGEPGIVGEKGDRG
TIGAPGPPGVKGSMGHPGTPGGIGFSGAPGPPGPAGVRGPPGIRGAKGRRGARGPDGPLG
EPGSRGVKGLQGEPGKPGPDGQQGKMGETGETGPRGFPGIQGPSGPQGGKGAPGDPGPQG
PQGPAGPLGEMGHKGPPGSMGQPGLPGEPGMKGDLGQLGVPGEKGLIGQRGEPGLVGDSG
PFGPDGVKGDKGEQGPEGERGEKGTEGLKGKEGPSGYPGITGVRGPEGKPGKQGEKGKNG
QKGSKGYQGQLGETGPPGKMGTKGTQGLKGSRGTLGPMGAPGRMGAQGEPGLMGYEGHAG
PPGPIGPPGPKGEKGEQGDDGKIEGPPGPPGDRGPVGNRGDRGEPGDPGYPGQEGLDGDR
GKAGQQGLPGHPGPPGQPGPKGSKGEEGQKGKQGAQGDAGSRGSPGPVGLPGPRGVVGRQ
GQEGSPGVDGVPGKDGTAGLQGEQGDDGEEGTTGISGKRGNPGTPGLPGAQGPPGFKGEG
GLPGQTGPTGKRGTQGGMGLPGSPGEPGPKGQPGDFGESGFPGIAGMFGPKGPPGNLGFK
GIQGPRGPPGLMGKEGIIGPLGILGHTGSSGPKGDKGSRGETGLQGPRGPPGPRGLPGPP
GSTRIPASFQQDGFGAFQTMMDMNTALKSTEQSYQHSDLLMLDQEGEIFKTLHYLSNLIQ
SIKRPLGTKENPARICRDLMNCEQKMGDGIYWIDPNLGCSSDTIQVTCNFTKGGQTCLSP
ITASKLEFNIGRVQMNFLHLLSSEAVQHITIHCLNMSVWREGSAEKPSEKAVRFKAWNGQ
IFEAEGPFKPKVATDDCKIQDGHWHKTVLTFWTQDPNQLPIVNIYNLPPSEPGKQYHLEV
GPVCFL
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaatcagagccggtctccagactcagagcaacagcagcagccaggggggga
tccctctttctctggactgttttatattttacctgtttccttggattcgcacaggggagt
tctgaagatgtggacattcttcaaagattgggcctggcagggaagaagccgttgagtacg
tggtcttcatcacactcggttcctcagggggttatccctttcaaatcgggggtcatcttc
actcagcgagcacgcatcgaggtgcccactagtaccatcatccctgctgccttcggcaca
gacttggccctagtgctgagcttgtgctcccaccgcatcaacaatgcttttctattctct
gtcaagagcaagaagaaaaaactgcagctaggggtccagttcatccccgggaaggtcatc
gtgtatgtaggccacaagcgctctgtatattttgattacaatgttcatgatggccactgg
cataacatggccattgacatccgaggccagatggtaactttatttacttcttgtgggaag
caaagactacatgcagatttgcattttaaaaaagatgaggcattggatccacaggggtct
tttctcttagggaaaatgaaccagcactcgatacagtttgaaggcgccatttgccagttc
gatatttatccttccgccaaggcagctcataattactgtaaatacctgaaaaaacattgc
aggcaagcggacaccttccggccgaatctgccccctcttgtcccactcttgcctagggat
cccagtgcttccccaatggcccctctgcagcctaagttcttgctacagggtttgaagaac
ctgaccactgtgatcccagcattagagctcatcaagatcacaacaccccccaagactcca
gttacagtgtccaccaccttggtcccatataagctgccttctccagggtcaacaaccaaa
gcagccaaggttacaatcatgcagtctaccattccatcgaatactgatatgcagctgccg
gtccattcgcactctcagactactacagcagccctcaggatatctcaaacctcttccaat
gcaagttcacagaaacactcctttcccacagtcagaaacatcctgcctgctggccaaaac
ttcactgccatcagcaggaaagagttggagcaagagaccaaaaagatgatcaaccagaaa
acatccaccaagccctctgaaacccccagcactgtaaagccaacaaggaagaagattgaa
aacacatctaaagatgtccaccccatgaccatgaaacaaaacccggagaacctgaccagt
ggacccatttcaaaaatgctattgccactaccaaccaggaaatccgttcctagcctagtt
cctctgctgtacaccaaatccacccctggatttgttcatcgtacctccagaaccagcgtg
caagccttcaaccttacaacccctgctgctgttgatgggtttcaggtctttgaccctgtt
ggacccaccctatttccatttttactgggacttcctggacttaaaggaaaccaaggtccc
ctgggccccccaggtctaccaggcttaccaggcccacctggcaagagaggcccacggggt
cctcctggtccccatggaaaccctggccgcccgggtctacctggccctaaaggccaaaaa
ggtgatcctgggctctcacctggaaaagctcgtaatggagagaagggagacatgggttta
cctggtttgagtgggcttcctggaccatctggtcggaagggatacaaaggctatccggga
ccaccaggtcatcctggagaccagggtgaacgtggaccagacgggagcccaggtgccaaa
ggttatcctggcaggcagggtttaccaggaccaataggcgaagctggtccaaaaggcagt
cgggggtatattggtctcccaggattatttgggctgccagggcctgatggagaacgaggt
atccctggagttcctggcaagaggggcaagatgggtaggccgggttttcctggcgatttt
ggtgaacgaggacctccaggcatagatgggaacccaggagaattgggagccccgggtcct
cctggagttcatggactcattggagatatgggcgctctcggaccaatagggtatccagga
ccaaagggactaaaggggctgatgggaaaccctggagaacatggactgaaaggtgataag
ggtgatcagggactgccaggtgttccaggagatattggattccaaggagacaagggcagt
cagggctttcctgggataccaggagcccgaggaaagccaggtccccctggaaagtttggt
gacaaaggtccagttgggtttccaggaccacccggtccggagggctttccaggggatatt
ggcacaccaggacaaaatggccccgaaggtccgaaggggaagcccggagcacgaggttta
cctgggccaagaggacagcctggccaagaaggagatgaaggacccatagggccaccaggg
tcccctggtccagagggtcgacctggcaggaagggatttcctggaaaacctggccctgat
ggttcaaagggtgagccaggacatccaggccggacgggaaaagtcggtgagcagggtctg
atgggtttcatcggtccagtcggggaacctggaatagtgggagagaagggtgaccgaggc
acaatcggagcaccgggcccaccgggagtcaaggggtcgatggggcatcccgggacgccc
ggaggaattggtttctcaggagctcctggaccaccaggccctgctggagtccggggaccc
ccaggtataaggggagcaaaaggccgtcggggtgccagaggtcctgatggaccactgggg
gagccagggtcaagaggtgttaagggccttcagggggagccaggcaaaccagggcccgac
gggcagcaggggaagatgggagagactggggagacaggaccacgtggcttcccaggtatt
caaggaccttccggaccccaaggaggcaaaggggctccaggtgacccgggacctcaggga
ccacaggggccagctggacctttaggagaaatgggacataagggacctcctggctcaatg
ggacaacctggccttccaggtgaacctggcatgaagggtgatcttggacagctgggggtc
ccaggagaaaaaggcctcattggtcaaagaggagagccaggcctggtaggggacagcggc
ccatttgggcctgacggagttaagggagacaaaggagagcaaggcccagaaggagagaga
ggagaaaaaggcaccgaaggattgaagggaaaagaagggccttctggatatcccggaatc
acaggtgtccgaggaccagaagggaaaccaggcaagcagggagaaaagggcaaaaacggc
cagaagggcagcaagggataccaggggcagctgggtgagacgggccccccagggaagatg
gggacaaaagggactcaaggcctgaaaggatccagaggtaccctgggacctatgggtgct
ccaggaaggatgggtgctcaaggggaacctggcttaatgggttatgaggggcatgcagga
ccaccaggtccaatcggaccaccagggccaaaaggggaaaagggagaacaaggtgatgat
gggaaaatagaaggccccccaggaccacctggtgacagaggtccagttggcaacagagga
gatcgaggggagcctggagaccctggctaccctggtcaggaaggacttgatggggacaga
ggaaaagctggacagcaaggtctacctgggcatcctggaccaccaggccagccagggcca
aagggatccaaaggtgaagagggtcaaaaaggaaagcaaggggcacagggtgacgctggc
agcagaggctcgccgggtcctgttgggttacctggtcctaggggagtagtgggaaggcaa
ggtcaggagggttctcctggagtggacggagttcctgggaaggatggcacagctgggctg
cagggagaacagggagatgatggggaagaaggtacaacagggatttcgggaaaacgaggg
aaccccggcacacctggtctccccggagcacaggggccaccaggatttaagggtgaagga
ggattgcctgggcagactggcccaacagggaaacggggtacacaaggaggaatggggctc
ccaggaagcccaggagagccaggacccaaaggacagccaggggactttggcgagtcagga
tttccagggattgcaggcatgtttgggccaaagggaccaccaggaaacctcgggttcaaa
ggaattcagggcccacggggaccgccaggtctcatgggaaaggaaggtatcattgggccg
cttggaattctgggtcacacaggaagctcaggtcccaaaggagacaaaggcagccgtggt
gaaacgggtttgcaaggtccaaggggtcccccaggtccacgaggactccccgggcctccg
gggtcaacaagaattccagcttcatttcaacaggatggctttggtgcattccagacaatg
atggacatgaacactgcactcaagtctacagagcagagctatcaacattcagaccttttg
atgctagaccaggaaggagagatctttaagactctacactacctcagcaacctcatccag
agcatcaaaagacccctgggaaccaaggagaaccctgcacgcatctgtcgagacctcatg
aactgtgaacagaagatgggtgatggtatttactggattgacccaaatctcggctgttct
tcagacaccattcaagtcacctgtaacttcaccaaaggtggacagacatgtctcagccct
atcactgcctctaagctggaattcaacattggtagagtccagatgaatttccttcacctg
ctgagctcggaggcggttcagcacatcaccatccactgcttgaacatgtcagtgtggagg
gaagggtcagctgagaagccttcagaaaaagctgtgcgttttaaggcctggaatggacag
atatttgaggcagaagggccgttcaagcccaaggtggcaacagatgattgcaagattcag
gatggacactggcataagactgtccttacgttttggacacaggaccctaaccagctgcca
attgtcaacatctacaaccttccaccatccgagccagggaaacaatatcacctcgaggtc
ggacccgtgtgcttcctttga
DBGET
integrated database retrieval system
