KEGG   Chelonoidis abingdonii (Abingdon island giant tortoise): 116835296
Entry
116835296         CDS       T07367                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cabi  Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03030  DNA replication
cabi03410  Base excision repair
cabi03420  Nucleotide excision repair
cabi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cabi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116835296 (LIG1)
   03410 Base excision repair
    116835296 (LIG1)
   03420 Nucleotide excision repair
    116835296 (LIG1)
   03430 Mismatch repair
    116835296 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cabi03032]
    116835296 (LIG1)
   03400 DNA repair and recombination proteins [BR:cabi03400]
    116835296 (LIG1)
Enzymes [BR:cabi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     116835296 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     116835296 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     116835296 (LIG1)
DNA replication proteins [BR:cabi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    116835296 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     116835296 (LIG1)
DNA repair and recombination proteins [BR:cabi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     116835296 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     116835296 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     116835296 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 116835296
NCBI-ProteinID: XP_032653915
Ensembl: ENSCABG00000006177
LinkDB
Position
Unknown
AA seq 946 aa
MQRPITSFFQPMKAVKEEEKIGLPAEEDSTSQLSEAAVMQRNGLSLCMDSPVKSAAKRPL
RRVLESDSDEEEAMLTARAEMEPIQDKSLERASSKQEPMQTPQSDISADSPSPSSSHSAG
DSPALSDSPAIGHAGIPRRRTARKQIPKRKIELSTSRENNRHEEPSAKRCREEQGPGDEA
GRGVKEEAAMEMQEVKELTEVNGTLEEGAVNKGEDDCAGGGAQEKPEAPKSSRAISSFFA
PKKVPEAKAGKADEHAAVEIPPPPTGSATVSSNGSDGTAGSFSKPVVPLDPMEYNPSKSS
YHPVQDACWGHGQRVPYLAVARTFERIEEVSARLKNIETLSNLFRSVIALSPSDILPCIY
LCLNRLGPAYKGLELGIGETILMKAVAQATGRQLDQIKAEAQEKGDLGLVAESSRSNQRT
MFTPPKLSAAGVFSKLQEIARMTGSASMNKKIDIIKGLFVACRHSEARYITRSLGGKLRI
GLAEQSVLSAIAHAVSLTPPGQGFPPEVLDAGQGKSAEARKAWLEEQTQILKQTFCELPS
YDIIVPILLEHGVESLPQHCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTCEYKYDGE
RAQIHILENGDVHIYSRNQEDNTSKYPDIISRIPKVKKGSVQSCILDAEAVAWDPEKRQI
QPFQVLTTRKRKDVEAAEIKVQVCLYAFDILYLNGESLVKEPFSRRRQLLHESFVETEGE
FLFATSMDTCSLDEISEFLDQSIKDSCEGLMVKTLEVDATYEIAKRSHKWLKLKKDYLEG
VGDTLDLVVIGAYLGKGKRVGMYGGFLMACYDEESEEYQSICKIGTGFTEESLEKHYSFL
KDHVLEKPRPYYRWDSSTEPNHWLAAVQVWEVKCADLSISPVHKAAIGLVDEEKGISLRF
PRFLRVRDDKKPEEATTSSQVAELYRQQQQIQNQQLVEKAEEEDFY
NT seq 2841 nt   +upstreamnt  +downstreamnt
atgcagcgccccatcacgtcatttttccagcccatgaaggctgtgaaagaggaagagaag
attggactgccagcagaggaggactcaaccagccagctgtcagaggcagctgtgatgcag
agaaatggcctgagtctctgcatggactccccagtgaaatccgctgccaagaggcccctg
cgccgggtcttggagagtgacagtgatgaggaggaggccatgctgacagcccgagcagag
atggagcccatacaggacaaaagcttagagagagccagcagcaagcaggagcctatgcaa
actcctcagtctgatatctctgcggatagcccctcaccaagcagtagccactccgctgga
gacagcccagccctttctgactcccctgccatcggccatgctggcatccccagacgcagg
accgctcgcaaacagatccccaaacgcaaaatagagctgtcaactagcagggagaacaac
aggcatgaggagccaagtgccaagagatgccgggaagagcaaggcccaggagatgaggca
ggcaggggagtaaaggaagaagcagccatggaaatgcaagaggtgaaagaactgactgaa
gttaatggcactttggaggagggggctgtgaacaagggagaagacgactgcgctggaggg
ggagcccaggagaagcctgaggcacccaagtccagcagagccatctccagcttctttgcc
cccaagaaggtgccagaggcaaaggcagggaaggcagatgaacatgcagcagtggagata
ccacctcccccaactggctcagccacagtgagcagcaatgggagtgatggcacagctggc
agtttctccaagccagttgtgccactggaccctatggagtacaatccttcgaagagcagc
taccaccctgtccaggacgcctgctgggggcatggtcagagggtcccctacctggctgtg
gctcggacctttgagcggattgaggaggtgtctgcccggctgaagaacattgagaccctg
agcaacctcttccgctcagtgatcgccctgtcaccatctgacattctgccctgcatctac
ctgtgtctgaaccgcctgggccctgcctacaaggggctggagctgggcatcggcgagacc
atcctcatgaaggctgttgcacaggcaacgggccgccagctggatcagatcaaagccgag
gcccaggagaagggggatctgggcttagtagctgagagcagccgtagcaaccagcgcacc
atgttcacaccacccaagctgagtgctgccggggtcttcagcaagctacaagagattgcc
aggatgacaggcagtgcttccatgaacaagaagattgacatcatcaaaggactgtttgtg
gcctgccggcactcggaagctcgctacatcactcggtccctgggcgggaagcttcggatt
gggctggcagagcagtcagtactgtcagccattgcccatgctgtgtctcttactcccccg
ggacaaggttttcctccagaggtgctggatgctggccagggcaaatctgcagaggcacgc
aaagcctggctggaggagcagacccagatcctcaagcagaccttctgtgagttgcctagc
tatgacatcatagttcccatcctgctggagcatggagtggagagcctgccacagcactgc
aagatcaccccagggatcccgctgaagcctatgctggcccagcctaccaagggcattggg
gaggtgctgaagcgctttgaggaggctgccttcacctgcgagtacaagtacgacggagag
cgagcccagatccacattttggagaatggggatgtgcacatctacagccgcaaccaggag
gacaacacttccaaataccctgacatcatcagccgcatccccaaggtgaagaagggcagt
gtgcagtcgtgtatcctggatgctgaggccgtggcctgggaccctgagaagaggcagatt
caacccttccaggtcctgaccacgcggaagcgcaaggacgtggaagctgctgagatcaaa
gtgcaggtgtgtctgtatgccttcgacattctgtacctcaatggggagtccctagtgaag
gaaccattctccaggcgccgtcagctgctgcacgagtcttttgtggagacggagggggag
ttcctgtttgccacctccatggatacctgcagcctggacgagatctctgaatttcttgac
cagtccatcaaagactcctgcgagggcctcatggtcaagaccttggaggtggatgccacg
tacgagatcgccaagagatcccacaagtggctgaagctgaagaaggattacctggaaggt
gtcggtgacactctggacttggtggtgattggtgcctatctgggcaagggcaagcgagta
ggcatgtatggtggcttcctgatggcttgctatgatgaggagagtgaggaataccagagc
atctgcaagatcgggactggcttcacagaggaaagcctggagaagcattacagcttcctg
aaggatcatgtgctagagaagccacggccctattaccgctgggacagcagcactgagccg
aaccactggctggcagctgtgcaggtgtgggaagtgaagtgtgctgacctgtccatctcg
cctgtgcacaaggcagctataggcctggtggatgaggagaaaggcatctccctgcgcttt
ccccggttcctgcgtgtgcgtgatgacaagaagcctgaggaagccaccaccagttcccag
gtggctgagctctacaggcagcagcagcagattcagaaccagcagcttgtggagaaggct
gaggaggaggacttctactag

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