Caballeronia sp. NK8: NK8_13750
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Entry
NK8_13750 CDS
T09553
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cabk
Caballeronia sp. NK8
Pathway
cabk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NK8_13750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cabk03400
]
NK8_13750 (mfd)
Enzymes [BR:
cabk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NK8_13750 (mfd)
DNA repair and recombination proteins [BR:
cabk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NK8_13750 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCQ23249
LinkDB
All DBs
Position
1:complement(1426206..1429682)
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AA seq
1158 aa
AA seq
DB search
MSSKAVKAQSSSPIALVKPGQRFAFDGATGSSDALAIARYYSAYRESVPLLTVVTAGAVD
AQRLAAEIPYFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILIVPA
TTALYRMPPASFLAAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLID
LYPMGSALPYRLDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSR
WREVFEGDPSRSQIYKDIGIGVPSAGIEYYLPLFFDETATLFHYLPEGAQLAFVGDMDAA
IKRFTNDTKQRFDFLSHDRERPLLEPRRLFLTDDDFFTFAKPFAQLKFPSTPEGGWAVPL
PGLAIDRHADEPLLALRHYLEQTDNRVMLVAESAGRRETIQQLLADNGLRGELRDTFQEW
LASDGKFTLGIAPLANGFVLPSEKLSIVTETELYGPLARRAGRRRQEQASNVDSMVRDLA
ELKIGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYQNDSKLYVPVAQLHVISRYSGA
DPDSAPLHQLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAAREGYAFKLEPRDYVKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAIL
SPTTLLAEQHTQTFTDRFADWPVRIAELSRFKTGKEVSTAIQQINDGSVDIVIGTHKLLS
GDVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRTMLEALVPE
ARIAVAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPSANTILMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIQEIGFQLYTDMLNDAVRALKEGREPDLNAPLAATTEINLHAPAILPAE
YCGDVQERLSLYKRLANCESSDAIDGILEELVDRFGKLPPQAHALVETHRLRLAAKPLGI
SKIDAAEQSISLQFVPNPPVDAMTIIEMVQKHKHIKLAGQDKLRIESRSPDLAVRISTVK
ETLRALGGPVRQPASAVR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaaagccgtcaaagcgcagtccagttctcctatcgcgctcgtaaagccaggc
cagcgtttcgctttcgacggcgcgaccggctcgtccgatgcgcttgccatcgcgcgctat
tacagcgcgtatcgcgagagcgtgccgctgctgacggtcgtgaccgcgggcgcggtcgat
gcgcagcgcctcgccgccgaaatcccctatttcgcgccggatgcgcgcgtgcgccttttg
cccgactgggaaacgctgccgtacgacacgttctcgccgcaccaagatctcgtgtccgag
cggctcgcgacgctgcacgatctcggcgaaggacgctgcgacattctcatcgtgcccgcg
acgacggcgctgtatcgcatgccgcccgcgtcgtttctcgcggcctacacgttctcgttc
acgcagggcgagcgcctcgacgaggcgaagctgaaggcacagttgacgctcgcgggctac
gagcacgtgagccaggtcgtgcgcccgggcgaatactgcgtgcgcggctcgctgatcgac
ctgtatccgatgggttcggcgctgccgtatcgcctcgacctgttcgacgatcaggtggac
tccattcgcgcgttcgatcccgacacgcagcgcagcctttatcctgtgcgcgacgtgcgc
ctgctgccgggccgcgagtttccgttcgacgaagccgcgcgcaccgcctttcgcagccgc
tggcgcgaggtgttcgaaggcgatccgagccgttcgcagatctacaaggacatcggcatc
ggcgtgccgtcggcgggcatcgaatactatctgccgctcttcttcgacgaaaccgcgacg
ctcttccactatctgcccgaaggcgcgcagctcgcgttcgtcggcgacatggacgcggcg
atcaagcgcttcacgaacgacaccaagcaacgcttcgactttctttcgcatgaccgcgag
cggcctttgctcgaaccgcgccgtctgtttctgaccgacgacgatttcttcaccttcgcc
aagccgttcgcccaactgaagttcccgtcgacgcccgaaggcggctgggccgtgccgctg
ccgggactcgcgatcgaccgccatgccgacgagcccttgctcgcgctgcgccattatctg
gagcagacggataaccgcgtgatgctggtcgcggaatcggcgggacggcgcgagaccatc
cagcaactgctcgcggacaacggcctgcgcggcgagttgcgcgacacgttccaggaatgg
ctcgcgagcgacggcaagttcacgctcggcattgcaccgctggcgaacggtttcgtgttg
ccgtcggagaagctttcgatcgtcaccgagacggagctgtatggaccgctcgcgcgccgc
gccggccgacgccggcaggaacaggcgagcaacgtcgattcgatggtgcgcgatctcgcc
gagctgaaaatcggcgatccggtcgtgcatgcgcaacacggcatcggccgctatatgggc
ctggtgtcgatggatctcggcgaaggcgaaaccgagtttctgcatctcgagtaccagaac
gactcgaagctgtatgtgccggtcgcgcagttgcacgtgatctcgcgctatagcggcgcg
gacccggacagcgcgcctttgcatcagcttggctcgggccagtgggaaaaggcgaagcgc
aaggccgcgcagcagatccgcgacaccgccgcggaacttctcaacctctatgcgcgccgc
gcggctcgcgagggttatgcgttcaagctcgaaccgcgcgattacgtcaagttcgcggag
agcttcggctttgaggagacgcccgatcaggcggcggcgatcgccgcggtgatcggcgac
atgacgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagacg
gaagtggcgctgcgcgccgcgttcatcgcggtgatgggcggcaagcaggtagcgattctc
tcgccgaccaccctgctcgccgagcagcacacgcagaccttcaccgaccgcttcgcggac
tggcccgtgcggattgcggagctgtcgcgcttcaagaccggcaaggaagtatcgacggca
attcagcagatcaacgatggcagtgtcgatatcgtcatcggcacgcacaagcttctgtcg
ggcgatgtgaagttcaagcggctcgggctcgtgatcatcgacgaggaacatcgtttcggc
gtgcgccagaaggaagccttgaaggcgctgcgcgccgaagtcgatgtgctcacgctcacc
gcgacgccgattccgcgcacgctcggcatggcgctcgaaggactgcgcgatttctccgtg
atcgcgaccgcgccgcaaaagcgcctcgcgatcaagaccttcgtgcggcgcgaggaagac
ggcgtaattcgcgaagcgatgctgcgcgaactcaagcgcggcggtcaggtgtacttcctg
cacaacgaagtcgagacgatcgagaatcggcgcacgatgctcgaagcgctggtgcccgaa
gcgcgcatcgcggtggcgcatggtcagatgcatgagcgcgaactcgaacgcgtgatgcgc
gatttcgtcggccagcgcgcgaacgtgctgttgtgcacgacgatcatcgagaccggcatc
gacgtgccgagcgcgaacacgatcctcatgcatcgcgcggacaagttcgggcttgcgcag
ttgcatcagttgcgcgggcgcgtggggcgttcgcatcaccaggcgtatgcgtatctgctc
gtgcacgatccgcagtcgctgacgaagcaggcgcagcgacggctggaggcgatccagcag
atggaggaactcggttcgggcttctatctcgcgatgcacgatctggaaattcgcggcacg
ggcgaagtgctcggcgacaagcaatcgggcgagattcaggagatcggctttcagctttac
accgacatgctgaacgacgcggtgcgcgcgctgaaggaaggccgcgagccggatctgaat
gcgccgctggctgccacgaccgagatcaatctgcatgcgccggccattcttccggccgaa
tattgcggcgacgtgcaggagcgtttgtcgctgtacaagcggctcgcgaactgcgaatcc
agcgatgcgatcgatgggattctcgaagagctcgtcgaccggtttggcaagctgccgcca
caggcgcatgcgctggtggagacgcatcggttgaggctggctgcgaagccgctcggcatc
tccaagatcgacgcggccgagcagtccatctcgctgcagttcgtgccgaatccgccggtg
gatgcaatgacgatcatcgagatggtgcagaagcacaagcacatcaagctggcggggcag
gacaagttgcgcatcgagtcgcggagtccggatcttgcggtgcggatttccacggtcaag
gagacgttacgggcgttgggcgggccggttaggcagccggcttctgctgttcggtga
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