Corynebacterium accolens: CACC_04515
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Entry
CACC_04515 CDS
T08449
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cacc
Corynebacterium accolens
Pathway
cacc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cacc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CACC_04515 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cacc03400
]
CACC_04515 (mfd)
Enzymes [BR:
cacc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CACC_04515 (mfd)
DNA repair and recombination proteins [BR:
cacc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CACC_04515 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UQZ27618
LinkDB
All DBs
Position
896456..900097
Genome browser
AA seq
1213 aa
AA seq
DB search
MATPMLAGLLKVAATDPKLKGLVANVGQDLHITGIDQARPWALGTLAHHAPVLAVTATSR
EAEDLTAELTAMMGDKVAMFPSWETLPHERLSPGVDIIGKRAQVLHNIDDLRIIVTAARG
LSQPILQDIEGRAPVHLEEDHEYNFDDVVRSLEFRAYKHVDMVAKRGEFATRGGIIDVFP
TTLDYPVRVEFWGDEVTDIRQFSVADQRTIPEIEVGRVDIFTARELPITDAVAQRAATLA
ATHTGNPALVELLTKVSEHIPAEGMEAVLPVLSDAPLITLSEFLPAATHVVMMAPEKIRR
RVEDLEKTDAEFLAAGWEAAAMGADGPLSTEGLDTEGSSYRSFESLEVSIREAGQPLWTF
SPPGMLAGPEEETLPLEFEPGPTPRGDIKEIDAMMAQLLAHTNAGGRAAFIAPAQGAIKR
MVERFAEQGIRTKVATPGWEPSAGEVTLYQALSHAGLVFPKVRKLKDAEALPLVVVTETD
LTGNRVGDIADAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSR
REYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGSESPHLSKMGGSDWKNTKKKARAAV
REIAGELVDLYAKRQAAPGHQFAPDNPWQAEMEDNFPFVETEDQMLAIDAVKEDMESTVP
MDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQHFDTFSERMAGFPVKMA
VLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEH
IKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAA
IRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARIVVAHGQMNEDVLEKTVQGFWDRE
YDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGAT
LTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGE
AVEAFKSLARGEAPAVTDEGPKEIRIDLPVDAHIPESYIDSERLRLEVYRKLAASQDNKD
LAAAREEMEDRFGPLPKEVERLLAVARLRHQARRAGVADITVQGTRVKFHPVELPDSKQV
RLKRLYPGSSFRAAAKAINVPFPKAGRNVTSPKLRDEELIQWAADFLSALFDVQPINVSG
EEAGAGSVISVGE
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccaatgctggcaggtctgcttaaggtcgcggccacagacccgaagcttaag
gggctcgtggccaatgtgggccaggacctgcacattacgggtatcgatcaggcgcgccct
tgggctcttggcaccttggcccaccatgcgccggtgctggcggtaacggccaccagccgc
gaggccgaggatctcaccgcggagcttaccgcgatgatgggcgataaagtcgcgatgttc
ccgtcgtgggagacgctgccgcacgagcggctgagcccgggcgtggatatcatcggcaag
cgcgcgcaggtgctgcacaacattgatgacctgcgcattattgtaacggccgcacgcggg
ctgtcccagcccatcctgcaggacatcgagggccgcgccccggtgcatctggaagaagac
cacgagtataacttcgatgatgtggtgcgcagcctggaatttcgggcgtataagcacgtg
gacatggtggccaagcgcggtgagtttgccacccgcggcggcattatcgatgtctttccc
accaccctggattacccggtgcgcgtagagttttggggcgatgaggtcaccgatatccgc
cagttttctgttgctgaccagcgcaccatcccggaaatcgaggtcggtcgcgtggatatc
tttaccgcccgcgagctgccgattacggatgcggtggcacagcgcgcggccacattggcg
gcgacgcataccggaaacccggcgctggtggagcttttgaccaaggtcagcgaacatatt
ccggctgaaggcatggaggcggttttgcccgtgctttccgatgccccactgatcaccctc
tccgagttcctccccgccgccacgcacgtggtgatgatggcgccggaaaagatcaggcgc
cgcgtggaggatctggaaaagaccgacgcggaattcctggccgccggatgggaggccgcg
gccatgggcgcggatggccccttgtccacggaagggctcgataccgaaggttcgagctac
cgctcctttgagtctctggaggtctccattcgcgaggccggccagccgctgtggacattt
tccccaccgggcatgctggccgggccagaggaagaaaccctgccgctcgagttcgagccc
gggcccaccccgcgcggagatatcaaagaaatcgacgccatgatggcccagctgctcgcg
cataccaacgccggcgggcgcgcggcgtttatcgcgcccgcgcagggcgccatcaagcgc
atggtggaacgctttgccgagcagggcattcgcaccaaggtggcaacccccggttgggaa
cccagcgcgggcgaggtcaccttgtatcaggcgcttagccatgccggcttggtctttccc
aaggtgcgcaagctcaaagacgctgaggcactcccgctcgtcgtggtcacggaaacggat
ctgaccggtaaccgcgttggcgatattgcagacgctaagcggcggccggccaagcgccgc
aataaggtggacccgctggcgctcaagcagggcgattttgtggtgcatgaaacgcacggc
atcggcaagtttttgaagatggccgagcgcaccatccaatctggcgatgagaccagccgg
cgcgaatacatcgtgctggagtatgcgccctccaagcgcgggcagccggcggaccagctg
tgggtgccgatggattcgctggatctgctgagcaaatacaccggcagcgaatcgccccac
ctttccaagatgggcggctcggattggaagaacaccaagaagaaggcgcgcgccgccgtg
cgcgagatcgccggcgaattggtggatctctatgccaagcgccaggctgcaccgggccac
cagttcgcgcccgataacccctggcaggcggagatggaggataatttccccttcgttgaa
accgaagaccagatgctggccatcgacgcggtgaaagaggacatggaatccacggtgccg
atggaccgcgtggtcgtcggcgatgtgggctatggcaagaccgaggtcgccattcgcgcc
gccttcaaagcggtccaagatggcacccaggtcgccgtcctggtgccgaccacgctgctg
gcgcagcagcacttcgatacctttagcgagcgcatggccggtttccccgtcaagatggcg
gtcctatcgcgctttacctccaagaaggaagctacggagatctttaaggggcttgccgat
ggctcgattgacatcgtcgtcggcacgcaccgcctgctgcaaaccggcgtgcactggaag
aacttgggccttatcgtcgtcgatgaggagcagcgctttggcgtagagcacaaggaacac
attaaggcgctgaaagccagcgttgacgtgctcaccatgtccgcgacgccgattccccgc
acgctggagatgtccatggctggcatccgcgaaatgtcgaccatcctcaccccgccagag
gatcgacacccggtgttgacttatgtcggtgcctacgaggacaagcaggtcgcggccgct
attcggcgcgagctgttgcgcgatggccagaccttctttatccacaataaggtctccgat
attgaaaagaaggcgcgcgaactgcgcgacttggtgccagaagcgcgcatcgtcgtcgcc
cacggtcagatgaatgaggacgtgctggaaaagaccgtccagggattctgggaccgtgag
tatgacgttttggtctgtaccacgatcgtggaaaccggcctggatatcgccaatgccaat
acgctcatcgtggaaaatgcccaccatatgggcttgtcgcagctgcaccagctgcgcggg
cgcgtgggccgctcccgtgagcgcggttatgcctacttcctgtaccccaagggtgccacg
ctgaccgagacctcctatgaccgcctggccaccatcgcccagaacaacgatctgggcgcc
ggcatggccgtggccatgaaggacctggagatgcgcggtgccggcaacgtgctaggcgcc
cagcaatccggccatatcgcaggcgtgggcttcgacctctacgtgcgcttggtgggcgag
gccgtcgaggccttcaagtccctggcccgcggcgaggcacctgcggtaacagacgagggt
ccgaaggaaatccgcatcgatctccccgtggatgcgcacattccagagtcctatatcgac
tccgagcgcctgcgcctcgaggtttaccgcaagctcgcggcctcgcaggacaacaaggat
ctcgcggcggcgcgggaggaaatggaagaccgcttcggccccttgcccaaggaggtcgag
cgcttgctcgccgtggcgcgtctgcgccaccaagcccgccgcgccggggtggcagacatt
acagtgcagggcacccgcgtgaaattccacccggtggaactgcccgattccaagcaggtg
cgcctaaagcgcctctacccgggctcgagcttccgggccgcggccaaggccatcaatgtg
cctttccccaaggctgggcgcaatgtcacttcgcccaagctgcgcgatgaggagctcatc
cagtgggcggcggacttcttgagcgcgctttttgatgtccaacccatcaacgtctccggc
gaggaagccggcgccgggtcggtcatcagcgtaggcgagtag
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