Candidatus Cloacimonas acidaminovorans: CLOAM0548
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Entry
CLOAM0548 CDS
T04769
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caci
Candidatus Cloacimonas acidaminovorans
Pathway
caci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLOAM0548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caci03400
]
CLOAM0548
Enzymes [BR:
caci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLOAM0548
DNA repair and recombination proteins [BR:
caci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLOAM0548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
ERCC3_RAD25_C
RecG_dom3_C
DUF5039
Motif
Other DBs
NCBI-ProteinID:
CAO80443
UniProt:
B0VGK6
LinkDB
All DBs
Position
complement(615187..618570)
Genome browser
AA seq
1127 aa
AA seq
DB search
MLYAKIEEILAQSKFMQRVLKLPLKDRSIQIYHLNQSARALLAVHLWKHTGKNIILVSQD
DIIAEDIWDDLCVLIGKENAHYLPDYEILPYEERSPHYSIRATRMETFLATLNNDKSAIY
SLSARALGRYLPAQKFLSRHILHLKQGMECEPDTLLHNLYDMGYEIQYQVSKVFQAAKRG
GIIDIFSPPLTNPVRLEFWGDEIIGMRVFSVTTQRSLEQYLTELTILPARELSLSDVDSG
SPIIAKIRNQGFFEGIENYYALLCNELQTFADYFEKDNRILVWNNFYYLQEEYETLFEQA
LTTWQKEAKIQGQGRVPRPEQMFADWDVLTELKEKSEKLYLSQSEFELSFPTLNMRAPFA
SQPNFESDLGLLAETLFSRNKEGWQNILLFDNQSQAKRMQQSIGKIPFTEFFGVLHEGFS
LEDCHLNLWTDHEIFNRYKSRRYTPRYAPGETIVNYEDLKPGDYVVHIDHGIGVFEGLKI
IRLDGSDVECLVLRYANDDRVYVPTYQLSLVTKYVAEESTKPVLNKLGSSKWNNTKRKAA
QQIELIAADIVKLYAERSSRLGIAHQPDTEWQKELEDSFIYEDTPDQSKATKEIKEDMEL
PAPMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAVLAPTTLLVEQHYRVFRERLAQYPV
KIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLLSKDVQFKKLGLLIIDEEHRFGVRH
KEKLRALQSNVDTLYMSATPIPRTLNMALSKLKEISLMQTSPKERLPVRTIITPRDMEVI
KDAIRREIDRGGQVFFIHNRVQTIETVATELRNAMPKVRFIVGHAQMPEQQLERVMADFW
AKEYQVLISTTIIENGIDIPNANTILIDNAETFGLAQLYQMRGRVGRSNRRAYAYLLISK
GTTTVARKRLEALTQYDYLGAGFQVALRDLELRGAGTILGTKQSGIIQAIGFNYYNRILA
NAIQAVEKGETIKLFNDESPDTRRKVRTEIDLYFPPDYIDDDEERLRIYKRLSELETLED
INNLEVELLDRFGPLPEQASWLLNYFQLSQLAKKLSLKDCQVKHDSFIMEFDAKKLPSQE
QLLHFTTKIKQPLRFEAGKNLKVIIDLDPEASYLQQFETAIEILKIW
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgctctacgctaaaatagaagagatattagcccaaagtaaatttatgcaaagggtgctc
aagcttcccttaaaagataggtctattcaaatttaccacctcaatcaaagtgcccgggca
ttattagcagttcatttatggaaacatactggaaaaaatataatccttgtttctcaggat
gatatcatagcagaggatatttgggatgacctctgtgtgcttatcggaaaggaaaatgca
cattatttgcccgattatgagattttgccctatgaagaacgttctccgcattacagtatt
cgggcaacgcgaatggagacctttcttgctacccttaataatgataaaagtgctatttat
tcgctttcggcaagagctttaggacgctatttacctgcccaaaaattcctctcccgtcat
attttacatctcaaacagggtatggaatgtgagcccgacaccttacttcacaatttatac
gatatgggttatgaaattcaataccaggttagcaaggtctttcaggcagcaaaaagaggc
ggtattatagatattttttcacctccgctaactaatcctgtgcgtttggaattttgggga
gatgaaattattggaatgcgtgttttttctgttactacacagcgaagtttggaacaatac
ttaacggaactgacaattttacctgccagggaactttctttaagtgatgttgatagtggt
tcaccaataattgccaaaattcggaatcagggtttctttgaaggaattgaaaattattat
gccttgctatgtaatgaattacagacctttgccgattactttgaaaaggataatcgcatt
ctggtttggaacaatttttactatcttcaggaagagtatgaaaccctttttgagcaagca
cttaccacctggcaaaaagaagccaaaattcaaggtcagggaagagttccgcgcccggaa
caaatgtttgccgattgggatgttttaacagaattgaaagagaaaagtgaaaaactttac
ctttctcaaagtgaatttgaactctccttccccactttaaatatgcgtgctccttttgca
agtcaacccaattttgaatccgatttggggctgctggcagaaacccttttttccagaaac
aaagagggctggcagaatattttactttttgataatcaaagccaggcaaagcgtatgcag
caaagtattggcaaaattccttttactgagttcttcggagttttgcacgagggcttttcc
ctggaagattgccatctaaatttatggaccgatcacgaaatctttaatcgttataaaagc
agacgctatactccccgttatgcacctggagaaaccattgtaaattatgaagacctcaag
ccaggggactatgttgtgcatatagatcacggtattggtgtttttgaaggactgaaaata
atccgtttggacggttctgatgttgaatgcctggttttgcgttatgctaatgatgatcgg
gtttatgttcctacttatcagctttctctggtaaccaaatatgtagcggaagaaagtacc
aaaccggttttaaacaaacttggcagttccaaatggaataatactaagcgaaaagctgct
caacaaattgaacttattgcagccgatattgttaagctatatgcagaaagaagttcacgc
cttggcattgctcatcaaccggataccgaatggcaaaaggaattggaggattcttttatc
tatgaggatacacccgatcaaagcaaagccacgaaagaaattaaagaagatatggaactt
ccggcaccgatggaacgactactttgcggagatgttggtttcggaaaaacggaagttgct
atccgagctgcatttaaagctgtctgcagtggctatcaggttgccgttttagcacctaca
actttattggtagaacagcactatagggtttttagagaacgcttggctcagtatcctgta
aaaattgtaatgtttagccgctttaggaaaaacaccgctatgaaaaaagaccttttaggt
cttaaaagtggctctattgatatcgccatcggaacccatcgtttgctttccaaagatgtt
caattcaagaaattgggacttttaattattgatgaggaacatcgtttcggagtgcgtcat
aaagaaaaactaagagccctccaaagcaatgtggatacactttatatgagcgcaactccc
attccgcgaactttgaatatggcactttccaaactgaaagaaatttccctgatgcagacc
tcgccgaaagaaagattaccggttcggactattattaccccacgggatatggaagtaatc
aaagatgctatcagaagagaaattgaccggggtggacaggtttttttcattcataaccgt
gtgcagacaattgaaacagtggcaacggaattaagaaacgcaatgcctaaagttcgtttt
attgtaggtcatgcccaaatgccggaacaacaactggaaagggtaatggctgacttttgg
gcaaaggaatatcaggtgctaatttctactactatcattgaaaacggtattgatatccct
aatgctaacacgattttaatagataatgccgaaacattcggtttggcacaactttatcaa
atgcgcggcagagtaggaagaagtaaccgaagagcttatgcctatctgcttatttccaaa
ggaactacaacagttgccagaaaacgcttggaggcattgacccaatatgattatttgggt
gccggctttcaagttgccttacgagatttggaattaagaggtgcgggaaccattttggga
actaaacaaagcggaattattcaggcaattggctttaactattataatcgcattctggct
aatgccattcaagctgtggaaaaaggcgaaacaatcaaattatttaatgatgaatcaccg
gatacaagaagaaaagtgagaaccgaaatagacctctattttccacccgattatattgat
gacgatgaagaacgcctgcgtatttacaaacgcttaagcgaattggaaacgctggaagat
ataaataatttggaagtggaacttttagaccgcttcggacctttgccagaacaggcaagt
tggcttctgaactatttccagctgagccaattagctaaaaaattgtctttaaaggactgc
caggttaaacacgatagctttattatggaatttgacgctaaaaaattaccttctcaagaa
caattgctccattttactaccaaaattaaacaaccgctgcgctttgaagcaggaaaaaac
ctaaaagttattattgatttagaccccgaagcaagctatctacaacagtttgaaacggcg
atagaaatcctgaaaatatggtaa
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