Cutibacterium acnes KCOM 1861 (= ChDC B594): RN83_03220
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Entry
RN83_03220 CDS
T04624
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cacn
Cutibacterium acnes KCOM 1861 (= ChDC B594)
Pathway
cacn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cacn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RN83_03220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cacn03400
]
RN83_03220
Enzymes [BR:
cacn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RN83_03220
DNA repair and recombination proteins [BR:
cacn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RN83_03220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
AAA_22
Glyco_tran_WecG
MFD_D3
AroM
Motif
Other DBs
NCBI-ProteinID:
ALD69244
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Position
690948..694574
Genome browser
AA seq
1208 aa
AA seq
DB search
MVSVGTTTYPMLVAFGGLTSLLSREPVLSHVVEDALTRRTPTLDLQVAASARPAVAAVLG
RSFDGSGRLPVLLVTSTFREAEESVATLKTWLGADSVCYYPSWETLPHERLSPRTDTVGR
RMEVLRRLCGTEGEVPQVVVAPVRSLLQPQVAGLGRIAPVRLAVGEQHDLTELTTELVNA
AYSRVDMVERRGEFAVRGGIVDVFPPVLEHPVRIDFFGDEIEEMTSFAVADQRSTDETHQ
ELICAPCRELILTDEVRSRAKALLTDHPELADMLERIGNGQAVEGMEALMPALVDEMELL
VDVLPEHAMVVLSDPEMVRSRAADLVRTSEEFLGAGWAAAAGGGQAPIDLAASGYRSLAQ
VRSHCLERGMAWWSMSSFSLDSPATDVLVDDDITSAPQTVNPQLVAVEPWHGDVETAVKD
LTTRLDDGWTVLLCAEGEGMAKRMSELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHG
FAADSVKLLVASTGDLAESQDPGGTGERRMPRRRRNQIQPLELKPGDLIVHEQHGVGRYV
EMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDW
RKRKARARKAVREIATELIKLYAARQATKGHAFGPDTAWQRELEDAFAYVETPDQLTTIA
DVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFQTFT
ERYAGFPVKVAALSRFQTDTEARETLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLVIVDE
EQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTFA
GPYDEGQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQL
EQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQLRGRVGRSRERG
YAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNLLGGEQSGHIADV
GFDLYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETERLRLEMYKRLAEVR
SDEEVDAIGAELVDRYGPMPEPVQALLGVARFRLLCRQAGIHEVVPAGRNIRFSPVNLPE
SRVMRLKRLYPGSVVKQTAGLVLVPKPMTATIGGQPLGGADLLKWSADLVTNVLAVDTPI
STGRPTEP
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtgtcggtaccaccacgtaccctatgctcgtggcttttggcggattgacctcc
cttctttcccgcgaaccggtgctctcccatgttgtggaggacgcccttacccggcgcact
cccacccttgaccttcaggtggcagcttcggcccgcccggcggtggcagccgtactgggc
cggtctttcgacggttccggacgtctgccagtattactcgtgacgagcacgttccgagag
gccgaggaatcagttgctaccttgaagacgtggctcggcgccgactctgtctgttactac
ccatcgtgggagaccttgcctcatgagcgtctgagcccgcgtacggacaccgtcggtcga
cgcatggaggtgctgcgtcggctgtgtggtaccgagggtgaggtgccacaggtggtggtc
gccccggtgcgctccttgctgcagcctcaggttgccggtctgggacgcatcgccccggtg
cgcctggcagtgggagaacagcatgaccttaccgagctcacgactgaactcgtcaacgcc
gcatatagccgggttgacatggtggaacgccgtggcgaattcgcagtacgtggcggtatc
gtcgacgtcttcccgccggtgctagaacacccggtccgtatcgatttttttggtgatgag
atcgaggaaatgacctccttcgcggtagccgaccagcgatccaccgacgagactcatcaa
gaactgatctgcgctccttgccgtgagctcatccttaccgacgaggtacgttcccgagcc
aaggccttgctgaccgaccatcccgaattagctgacatgttggagcggatcggcaacggt
caagctgtcgaggggatggaagctcttatgccggccctcgtcgatgagatggaactactc
gtcgacgtcttgcctgagcatgccatggtcgtcctgtcagatccggagatggtgcgctct
cgtgcggcggatctggttcgcacctccgaagagttcctcggtgctgggtgggcagctgcc
gccggcggcggacaagctcctattgacctggctgcttcgggttatcgcagcttggcccag
gtaagatcgcactgtctagagcgcggcatggcctggtggtcgatgtcctccttttctctg
gattctccggcaactgatgtcctcgtcgacgacgacatcaccagtgctccgcaaacggtt
aatccccagctcgtggccgttgagccgtggcatggcgacgtcgagacagctgttaaagat
ctgacgactcgccttgacgacggctggacggtcctgttgtgcgccgagggtgagggcatg
gccaaacgcatgtccgagctgttgggggagcacaacgtcgcggccagactggttgacgat
gtcgacccggatgccaccgagccgtgcgttcaggtcatccgacttcaccagcgtcatggg
ttcgcggccgattctgtcaaactgctcgttgcctccaccggtgacctcgccgagtcccag
gatcccggtggcactggcgaacgtcgtatgcctcgacgacgtcggaatcagatccaaccc
ctggagctcaagccgggcgatctcatcgtccacgagcagcacggtgtggggcggtacgtg
gagatggtgcagcgcactgtcggcggcgctacccgcgagtacctcgttatcgagtacgcg
ccctccaaaaaaggtcagcctggtgaccgcctcttcgtgccggtaaactcgctggatcag
gtgacccgatatgtcggtggggacgcccccagcctcgaccgtatgggtgggggagactgg
cgcaagcgcaaggcgcgtgcccgcaaggcggttcgtgagatcgccaccgagctgatcaag
ctctatgctgctcgtcaggccaccaaggggcatgctttcggccctgacactgcgtggcag
cgggagttggaggacgccttcgcttacgtcgagacacctgaccagctcaccaccattgcg
gacgttaagcgtgacatggagcaggtcgttccgatggaccggctggtctgtggtgatgtc
ggctacggtaaaaccgagatcgcggtacgtgctgcgtttaaggcggttcaggacggcaag
caggtggcggtgctggtgcccactactttgctggtgcagcagcatttccagaccttcact
gagcgttacgcaggtttccccgtcaaggtggcggccctgtctcgtttccagactgacacc
gaagcccgcgaaaccctcgagggacttaaacgcggtaccgtcgacgtcgtcgtcggtacc
catcgcttgctggccaaggaggttgagttcaaggatctcggcttggtcatcgttgacgag
gagcagcgttttggcgtcgagcacaaagaggcgcttaaacgcatgagggtcaacgtcgat
gtgcttgctatgagcgctacgccgatcccgcgcaccttggagatggcggtgacaggcatc
cgtgagatgagtacgatcgccaccccaccagaggagcgtcacccggtgctcactttcgcc
ggaccctatgacgaggggcaggttgttgcggcgatccggcgtgaacttgctcgtgaaggt
caggtcttttacatccacaaccgcgtgcagtctattgaaaagacagctgccaagctgcgt
gaactcgttccagaggcgcggattgtcactgcccacggccagatgaacgagaaacagctg
gagcagatcatggtggacttctgggagcgtcgtgccgacgtcctggtatgcacgacgatc
gttgagtcgggtatcgacatttccaccgccaatactctgctcatcgatcgagctgacctt
atggggctgtctcaactgcaccagttgcgtggtcgtgtggggcgctctcgggagcgcggc
tatgcctacttcttgtacccagcggacaagccactctcccaaacggctcacgaccgcttg
gcgacgatggccgcccacaccgacttgggttctggcatggctatcgccatgaaggatctg
gagattcgcggcgccgggaatctgcttggtggtgagcagtccgggcacattgctgacgtt
ggcttcgatctctatattcgtctggtaggtgacgccgtcgctgagttccgtggggacagc
accactgccgatgaaccggagatgcgtatcgagctgcccgttgacgccaaccttccagtt
gagtacgtcgaaactgaacgtctacgccttgagatgtataagcgattggctgaagtgcgc
agtgacgaggaggttgacgccatcggggccgagttggtcgaccgttatggaccgatgccc
gagcccgttcaagctttgcttggggtggcgcgattccgcctgctatgtcgacaggcggga
atccatgaggtcgttccggctggacgtaacatcaggttttcgccggtgaacctgccggaa
tcccgggtgatgcgcctcaagaggttgtatcccggatcggtggtcaagcaaacagcgggt
ttggtgttggtgcctaaacccatgactgcaacgattgggggacagccattgggcggtgcc
gacttgttgaagtggagtgccgacctcgtgacgaacgtcttggctgttgacaccccgatc
agcacgggccggcccactgagccataa
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