Gottschalkia acidurici: Curi_c23830
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Entry
Curi_c23830 CDS
T02255
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cad
Gottschalkia acidurici
Pathway
cad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Curi_c23830 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cad03400
]
Curi_c23830 (mfd)
Enzymes [BR:
cad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Curi_c23830 (mfd)
DNA repair and recombination proteins [BR:
cad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Curi_c23830 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
IstB_IS21
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFS79378
UniProt:
K0B012
LinkDB
All DBs
Position
complement(2498405..2501938)
Genome browser
AA seq
1177 aa
AA seq
DB search
MTQNMFIDSLKNLNSYSQIIDGIEKNNSPIALHGLSGENISHISHGINQHLDRQVLIITY
DELKAKTISEDLNFFDKENSEIFPSRDIVFYDVDAFSHDISNQRLKVLDRLCKGENIIVV
SSINAIINKIMSPDGLRKYIGKLKFGQIVELETLGSQFIAQGYERVDMIEGKGQFAIRGG
IIDFFPINSEIPFRVELFDEEVDSIRTFDIKTQRSIDNIKEVDIPPVKEVLIEDDQIEQI
IENIKEDLNISLKKLEKNKSLKEIKEKLSEKFNNYIDRIDNKLNISNLDIVLPYISENIS
NLINYFKDDAIIIVDEPQRIEESMKDFKSEFMVKYTDLFERGEVLSKQQNIYYSLEEIVE
DINKKNCITSTNLLKNTSLFKPKAIINFGVKGMQSFHNKLDILVEDLNHYKYRGYKVIIL
CGVEERGKRLLHDLKDSGIECSFVEDGDREIKSGQVFITPGSVSRGFEYSALKLAIISDK
EIFGTNKKKKTFKSRKDAAPISSFTDLKIGDHVVHESHGIGKYLGIEQLKVQGVKKDYMT
VKYSGEDRLYVPIDQMNLIQKYIGSDSGDPKVNKLGSGDWVKTKTKVKKQIEDMAKDLIK
LYATRHTIKGYKFSEDTPWQKQFEDAFPYQETDDQLRSISEIKTDMETEKPMDRLLCGDV
GYGKTEVALRAAFKAVMDGKQVAILVPTTILAQQHYNTLVERFADFPVKVEMLSRFRTAG
QQKKIINDLKSGNLDILVGTHRILSKDVKLNNLGLLIIDEEQRFGVKHKEAIKILKESVD
VLTLTATPIPRTLHMSLIGIRDMSVLEEPPEERYPIQTYVVEYNEQMLRDAIVKELSRNG
QIYILYNRVQTISEFSAKIQRLVPEARITVAHGQMSERELEKVMLEFLKGEYDVLVCTTI
IETGLDIPNVNTIIIHDADKMGLSQLYQLRGRVGRSNRIAFSYFTYEKDKVLTEVAEKRL
RAIKEFTEFGSGFKIAMRDLEIRGAGNLLGGEQHGQMAAIGYDLYVKYLDEAIKRLRGEQ
REEKVETSIELNVDGYIPDRYIRNEDQKIEVYKRISAIENKSDYSDILEEIIDRFGDVPK
QVVNLINISYIKSLCSRAKISSIKQIDKLVKIEFIEDKYITLDLMNELLSRFGSNIQFDI
SRNPSIKYKLKGNSQEDILSELEDVAGKISSFINASK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgactcaaaatatgtttatagatagtttaaaaaacttaaactcatatagtcaaataata
gatggaatagaaaagaataactcaccaatagctttacatggtttatctggagaaaatata
tctcatatatctcatggtataaatcagcatttagatagacaagtacttataattacttat
gatgaattgaaggcaaaaaccatatcagaggatttaaatttctttgataaagagaatagt
gagatatttccttcaagagatatagttttttatgatgtggatgcttttagtcatgatata
tctaatcaaagattaaaggttttagatagattatgtaagggtgaaaatataatagtagta
tcttctataaatgctattataaataaaataatgagcccagatggattaagaaaatacatt
ggcaaattaaagtttggacaaattgtagaactagagacattgggtagccaatttatagca
cagggatatgaaagagtagatatgatagaggggaaaggacaatttgctataagaggtgga
ataatagatttctttcctataaactcggaaataccatttagagtagaattatttgacgaa
gaagtagactctataagaacttttgatataaagactcaaagatctatagataatataaaa
gaagtagatattccaccagttaaagaggttttaatagaagatgatcagatagaacaaata
atagaaaatataaaagaagacttaaatatatctttaaagaaactagaaaaaaacaaatca
ttaaaagaaattaaggaaaaattaagtgaaaaattcaacaactatatagatagaatagac
aataaactaaatatcagtaacttagatatagttctaccatacatatctgaaaatatttct
aacctaataaattattttaaagatgatgcaattataatagtagatgaacctcaaagaatc
gaagaaagtatgaaagactttaaaagtgagtttatggttaaatatacggacttatttgaa
agaggagaagttcttagtaaacagcaaaatatttactactcgctagaggaaatagtagaa
gatataaataaaaagaattgcataacttcaaccaatctattgaaaaatacttctttattt
aaacctaaagcaataataaactttggggtaaagggtatgcagtcatttcacaataagtta
gatattctagtagaagacttaaaccactataaatatagaggatataaagtaataatattg
tgtggagtagaagaaagaggaaaacgactactacatgatttgaaagatagtggaatagaa
tgttcatttgtggaagatggagatagagaaataaaatcaggtcaagtatttattactcct
ggtagcgtaagtagaggatttgaatattcagcgttaaagcttgctatcataagtgataaa
gaaatctttggaactaacaaaaagaaaaaaacatttaaatcaagaaaagatgcagcacca
atatcatcgtttacagatctaaaaataggtgatcatgtagttcatgagtcacatggaatt
gggaagtatttagggattgaacagttaaaagtccaaggtgtaaaaaaggactatatgaca
gtaaaatattctggtgaagatagactatatgttcctatagatcaaatgaacttaattcag
aagtatataggatcagattcaggcgatcctaaagtgaacaaacttggaagtggagactgg
gttaagactaaaactaaagttaaaaaacaaatagaagatatggcgaaagatttaataaag
ctatatgctactagacatacaatcaagggctataagtttagtgaagataccccatggcaa
aagcagtttgaagatgcgtttccttatcaggagacagatgatcaattgagaagtatatca
gaaataaaaactgatatggaaacagaaaaacctatggatagacttctttgtggagatgtg
ggttatggaaaaacagaagttgcactcagagcagcatttaaagcagttatggatggaaaa
caagtagctatactagttcctacgacaatactagcccagcaacactataatacactagta
gaaagatttgcagactttcctgttaaagtagaaatgttaagtaggtttagaactgctgga
caacaaaaaaagattataaatgatttaaagagtggaaatttagatatcttagtggggact
cataggatactatcaaaagatgttaaactaaacaacttagggctattaataatagacgaa
gagcaaagatttggtgtaaagcataaagaagctataaaaatacttaaagaatcagtagat
gtgttaacgttaacagcaacacctatacctagaactcttcatatgtcacttatagggatt
agagacatgagtgtactagaggagcctccagaagaaagataccctatacaaacgtatgtg
gttgaatataatgagcagatgcttagagatgctatagtaaaagaattaagtaggaatggt
cagatatatatactttacaatagggtacagactataagtgaatttagtgctaagatacaa
cgcttagtacctgaggctagaattacagtagcccatggtcagatgagtgaaagagaactt
gagaaagttatgttagagttcttaaaaggagagtatgatgtattagtatgtactacaatt
atagagacaggtttagatatacctaatgtaaatactataataatacatgatgctgataaa
atgggactatcccaattatatcagctaagaggaagagttggacgatctaatagaattgct
ttttcttactttacgtatgaaaaagacaaggttctaacggaagttgcagaaaaaagatta
agagctataaaagagtttactgaatttggttcaggatttaaaatagctatgagagactta
gagattaggggagctggaaacttattaggtggagagcaacatggtcagatggctgctata
ggatatgatttatacgttaagtatttagatgaggctataaagaggttaagaggagaacaa
cgagaagaaaaagtagaaacaagtatagagctaaatgttgatggatatattccggataga
tatattagaaatgaagatcaaaaaattgaagtatataagagaatttcagcaatcgaaaat
aaaagtgattattctgatatactagaagaaataatagatagatttggagatgttccaaaa
caagttgtaaatctaataaatatatcctatataaaatcgttatgctcaagagctaagata
tcttcaataaaacaaatagataaattagttaaaatagagtttatagaagataaatatatt
acactagatcttatgaatgaacttttaagtagatttggttcaaatattcaatttgatata
tctaggaatcctagtataaaatataagcttaagggtaacagtcaagaggatatattgagt
gaactagaggatgtagcaggaaaaattagtagttttataaatgcaagtaaataa
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