Caenibius sp. WL: K5X80_12660
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Entry
K5X80_12660 CDS
T08345
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
caen
Caenibius sp. WL
Pathway
caen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
caen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K5X80_12660 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caen03400
]
K5X80_12660 (ligD)
Enzymes [BR:
caen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K5X80_12660 (ligD)
DNA repair and recombination proteins [BR:
caen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K5X80_12660 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QZP07511
LinkDB
All DBs
Position
complement(2648708..2651227)
Genome browser
AA seq
839 aa
AA seq
DB search
MASSDPLAIYNAKRDFRKTREPKGTRGKSTGHRFVVQKHAASRLHYDFRLEIDGVLKSWA
ITKGPSLDPGDKRLAVRTEDHPLSYGGFEGTIPQGEYGGGSVMLWDEGDWAPVAGKSERD
LEQGHLHFTLHGQRMKGEWLLVRMKPRPGEKRENWLLRKLDDRYAGGSDDLIAHELTSIK
TGRTMAEIAADAEGRVSLKGKKGKAWDAAMRKADKAAERQAKPVEKARRGRAEGRVRSGP
LPKFRPVQLASLVNAVPAGNGWLHEVKYDGYRALIAVAGNKVRIFTRTGLDWTERYPTIA
KAMAEHGISSALIDGEIVAFDGNGNPSFAKLQEALQSGSGKVAFFAFDLLAVDGKDLTAQ
PLIERKERLAALIGEDAEGPVRYSDHIIGAGEKLFEALCGAGQEGIIAKQVSAPYRGGRS
HSWVKVKCTHREEFIVVGWSASRSRSRPFASLLLAQNRNGDLVYSGRVGTGFSSATLDDL
DARLKRLLRKTPPLEAPSPAARSVHWVKPELVAEIAYTERTRDGILRHPSFIGLREDKPA
EQVRAEEPIAAVPAEDRITITHAERVIFPESGATKGDLAEYYRTIGALMLPFAASRPISL
VRCPQGRAKQCFFQKHDSGSFGPHVHHIPIKEKDGGVEDYLYIEDRDGLIACVQMGTIEF
HGWQSRTDAIEKPDRLVFDLDPDVGLDFADVRRAARDISRTLSDMGLVNFAMLSGGKGIH
VIAPLTPGATWETVKDFAQRFAMAMAVQSPERFTATMSKAKRQGRIFIDWLRNQRGSTSV
VPYSARARPGATVATPIGWDELDDYADAKAFSIRDADRLLSRAHKLRGWGFCDQSLPAF
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatctgacccgctcgccatttacaacgccaaacgcgatttccgcaaaacgcgg
gagccgaaaggcacgcgcggcaaaagtacaggacatcgcttcgtcgtgcagaagcatgcc
gcttcccggctgcattacgatttccgcctggaaatagatggcgttctgaaaagctgggcg
atcacgaaagggcccagcctcgatccgggcgacaagcggctggcagtgcggaccgaagat
catccgctgagctatggcgggtttgaaggcaccattccccaaggcgaatacggcggcggg
agtgtgatgctctgggacgagggtgattgggcgccggtcgcagggaaaagcgaacgcgat
ctcgaacaggggcacctgcattttacgctgcacgggcagcggatgaaaggcgaatggctg
ctggtccgcatgaagccccggccgggcgagaagcgggaaaactggctgctgcgcaaactt
gatgatcgctatgccggcggaagcgacgatctgatcgcgcacgaactgacatcgatcaag
accgggcgcacgatggcggaaattgccgccgatgcggaggggcgcgtctcgctcaagggc
aagaaaggcaaggcttgggacgcggcaatgcgcaaggcggacaaggctgccgaacggcag
gcgaaaccggtggagaaagcgcggagaggtcgcgccgaagggcgcgttcgaagtggtccg
ctgcccaaattcagaccggtacagctcgcttcactggtcaacgcggtgccggctggcaac
ggatggctgcacgaggtcaaatacgacggctatcgcgcgctgattgcggtggcggggaac
aaggtccgcatcttcacgcgcaccggactggactggacggagcgttaccccaccatcgcc
aaggcgatggcggaacacggcatttcttccgcgttgatcgacggtgaaatcgtcgctttc
gatggaaacggcaatcccagcttcgccaaactgcaggaagcgctgcaatcgggcagcggc
aaagtggcgttcttcgctttcgatctgctcgcggtggacggaaaggatctgacggcacag
cccctgatcgagcgaaaggaaaggctggccgcgctcatcggggaagatgcggagggcccg
gtgcgctattccgatcatatcatcggcgcaggtgagaagctgtttgaggccctgtgcggg
gcggggcaggaagggatcatcgccaagcaggtttccgctccttatcgtgggggacgctcg
cacagctgggtcaaggtcaaatgcacgcaccgtgaggagttcattgtcgttggctggagt
gcgagccgttcgcgttcccgccccttcgcttcgctgcttctggcccagaacaggaatggc
gatctagtctatagcgggcgtgtgggcaccggcttcagcagtgcgacactggacgatctg
gatgcacggctgaagcgcctgttgcgcaaaacacccccgcttgaggcgccatcgcccgcc
gcgcgcagcgtgcattgggtaaagccggaactggttgcggaaattgcctataccgaacgg
accagagacggcatcctgcggcatcccagcttcatcggattgcgggaagacaaaccggcg
gagcaggtgcgggcggaagagcctatcgctgcggtgcctgccgaggatcgcatcaccatc
acccatgcggaacgggtgatctttcctgaaagcggcgccaccaagggcgatctggcggaa
tactaccgcactatcggtgcgctcatgctgccatttgccgcctcgcgcccgatcagtctg
gtccggtgtccgcagggccgggcgaagcaatgctttttccagaagcacgacagcggttcc
ttcgggccgcatgtgcatcacatcccgatcaaggaaaaggatgggggtgtggaggactat
ctctatatcgaggatcgggacggcctgatcgcgtgtgtccagatgggcacgatcgaattc
catggctggcaatcgcgcaccgatgcgattgagaaaccggatcggctagtatttgatctc
gatccggatgtcggcctcgattttgccgatgtgcgccgcgccgcgcgcgatatctcgcgg
accctttccgatatggggctggttaatttcgccatgctgtcgggcggcaaggggatacat
gtcatcgcccccctgacccccggtgcgacctgggaaacggtcaaggatttcgcgcagcgt
ttcgcaatggcaatggcggtgcaatcgcccgaacgcttcaccgcgacgatgagtaaggcg
aagcggcaagggcggatattcatcgactggctgcgcaatcagcggggctcgacttcggtc
gttccctattcggcgagagcgaggccgggggcgacagtggcgaccccgatcggctgggac
gaactggatgattacgccgacgcgaaggccttttccatccgcgatgcggatcgcctgctt
tcgcgggcccacaagctgcgcggctggggcttttgcgatcagtccttgcccgcgttctga
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