Corynebacterium afermentans subsp. lipophilum: CAFEL_00620
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Entry
CAFEL_00620 CDS
T09361
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03030
DNA replication
cafe03430
Mismatch repair
cafe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAFEL_00620 (dnaX)
03430 Mismatch repair
CAFEL_00620 (dnaX)
03440 Homologous recombination
CAFEL_00620 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cafe03032
]
CAFEL_00620 (dnaX)
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_00620 (dnaX)
Enzymes [BR:
cafe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CAFEL_00620 (dnaX)
DNA replication proteins [BR:
cafe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CAFEL_00620 (dnaX)
DNA repair and recombination proteins [BR:
cafe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CAFEL_00620 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
DnaX_C
DNA_pol3_gamma3
AAA_22
RuvB_N
AAA_30
AAA_19
AAA_16
AAA_14
Rad17
Mg_chelatase
AAA_18
AAA_28
Herpes_Helicase
Motif
Other DBs
NCBI-ProteinID:
WJY57915
LinkDB
All DBs
Position
154149..156317
Genome browser
AA seq
722 aa
AA seq
DB search
MALYRKYRPATFGEVIGQEQVTRPLSTALDNGRISHAYLFSGPRGCGKTSSARILARSLN
CVEGPTSTPCGVCESCVALAPGGSGNLDVMELDAASHGGVEDMRELRERALFAPAESRYR
VFIIDEAHMITKEGNNALLKIVEEPPAHLIFIFATTEPEKMLGTIRSRTHNYPFRLLAPQ
AMRELVQHVVEEEGVHVDENVYPLVIRAGGGSPRDTLSILDQMLSGAGEDGLTYELALPL
LGVTDLTLLDAAVDALADRDASAMYRTIDQVIESGHEPRRFALDLLDRMRDLLLIRTVPD
AFGQGLVDAPSDRADILTQEAHQFSPQHLAQLASEVNDRIASLRGATSPRLLLEIMAAHL
LTLQPAGGAELPQPAASPAPSQPATQTTQPQQAQQPQQPSPARAGGGAAAAAAAAAAAAS
RGRQQEQQAPAQPEQPEQPAPDPRPQPAEQPREQQAPDTDELFERIDKDWTRLRQSVGER
NKVAEIMLTEATPLGFDGDVLVVGHHTGALAERINAEKNNADIATVLSEKLGAKMQVRCV
IGTDPATANLRRPAKREVWNPGAETGEGSDGASDSDSSDGSDSDDPAPAPAAGWDAPAQI
GGPAPAQQQKQQQEQQPTQQAPQASAAQSTPPMPAKREDDWRTAALAASQKAAEKAKRER
DEIPPPPEPYNYDEEAPPEYTREDEERDMADQARDEAGTADRRDATEVAMDLLAAELGAK
PL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
gtggctctgtacaggaaataccgccccgcaacgttcggcgaggtcatcggccaagagcag
gtgacccgccccctttcaaccgccctggacaacgggcggatctcgcacgcctacctcttt
tccggcccgcgcggctgcggaaagacgtcctcggcgcgcatcctggcgcgatccttaaac
tgcgtcgaggggcccacctccaccccctgcggcgtgtgcgaatcctgcgtcgcgctcgcg
ccgggcggcagcggcaacctggacgtgatggagctcgacgccgcctcccacggcggcgtg
gaggacatgcgcgaactgcgagagcgcgccctgttcgcgccggcggaatcgcgctaccgc
gtcttcatcatcgacgaggcccacatgatcacgaaggagggcaacaacgccctgctgaag
atcgtggaggagccgcccgcccacctgatcttcatcttcgccaccaccgagccggagaag
atgctgggcaccatccgctcgcgcacccacaactacccgttcaggctgctggcgccgcag
gcgatgcgcgagctggtgcagcacgtggtggaagaagaaggcgtccacgtcgacgagaac
gtctacccgctggtcatccgcgccggaggcggctcgccgcgcgacacactttcgatcctg
gaccagatgctctccggcgccggcgaggacggcctgacctacgagctggcgctgccgctg
ctcggggtgacggacctgacgctgctcgacgccgccgtcgacgctttggcggaccgcgac
gcgagcgcgatgtaccgcaccatcgaccaggtcatcgagtccggccacgagccccgccgc
ttcgccctcgacctgctggaccgcatgcgcgacctgctgctcatccgcaccgtcccggac
gccttcgggcaagggcttgtcgacgcaccttcggaccgcgccgacatcctcacccaagag
gcccaccagttttccccgcagcacctggcccagttggcgtccgaggtcaacgaccgcatc
gcgagcttgcgcggcgccacctctccgcgcctgctgctggagatcatggccgcccacctg
ctgaccctgcagccggccggcggggccgagctgccccagcctgcggcgtctcctgcgccg
tctcagcctgcgacgcagaccacgcagccgcaacaggcacagcagccgcagcaacccagc
cccgcgcgtgcgggcggtggcgcggccgcggcggccgccgcagctgccgcggccgcgtcg
aggggccgccagcaggagcagcaggcccccgcacagccggagcaaccggagcagccggcg
ccggacccgcgcccgcagcccgccgagcagccgcgggaacagcaggcgcccgacaccgac
gagctgtttgagcgcatcgacaaggattggacgcggctgcgccagtccgtcggcgagcgc
aacaaggtcgcggagatcatgctcaccgaggccacaccgctcggcttcgacggcgacgtg
ctcgtggtcggccaccacaccggcgcgctggccgagcgcatcaacgccgagaagaataac
gccgacatcgccaccgtgctctccgagaagctcggggcgaagatgcaggtgcgatgcgtt
atcggcaccgacccggcgacagcgaacctgcgccgccccgccaagcgcgaggtgtggaac
ccgggcgcggagaccggtgagggctcggacggtgcgagcgactctgacagctcggacggc
tcagattccgacgaccccgcgcccgccccggccgcaggctgggacgcgcccgcccagatc
ggcgggcccgcaccggctcagcagcagaaacagcagcaagaacagcagccgacacagcag
gcaccgcaggcatcagcagcgcagtcgaccccgccgatgcccgccaagcgcgaggacgac
tggcgcaccgccgcactggccgccagccaaaaggccgccgagaaagccaagcgcgaacgc
gacgaaatcccgccgccgcccgagccgtacaactatgacgaggaggcgccgccggaatac
acccgcgaggacgaagaacgcgacatggccgaccaggcgcgcgacgaggcaggcaccgcc
gaccgccgcgacgccaccgaagtggcgatggacctgctcgccgccgagctcggcgcgaag
ccgttgtag
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