Corynebacterium afermentans subsp. lipophilum: CAFEL_03735
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Entry
CAFEL_03735 CDS
T09361
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAFEL_03735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_03735 (mfd)
Enzymes [BR:
cafe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAFEL_03735 (mfd)
DNA repair and recombination proteins [BR:
cafe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAFEL_03735 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
CbiX
AAA_22
Glyoxalase
RecG_dom3_C
MFD_D3
AAA_30
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WJY58525
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All DBs
Position
779009..782641
Genome browser
AA seq
1210 aa
AA seq
DB search
MTETTPPVLGGLLTAALTDPKLKGLVTHVGEDSLHVTGIDQVRSWAAGAIAREAPVLLVT
ATGHEAEDLAAELKAILGEEKVAQFPAYETLPHERLSPAPDIVGRRSKVLWEMPRVIVAA
ARAVCQPVLPPVQPISIAVDQEHDFEDLTAKLVHFAYNHVDMVASRGEFATRGGIIDVFP
TTAQNPVRIEFWGDEVTDIRSFAVADQRTIEEVRSVDLHPARQLLIDDAVAAKVDELARK
FPSNPTLSSLLARISEKQPADGMEALIPALTDKQYSVLPELMPAGSVVLVTNPEKVRTRI
ADLEATDREFLEAGWEAAAMGAEGPVVVEGLDVSASSYRSYESLEVSASKAGNAWWTFAP
PGMFAADDADTLPLEFEAAPAPKGDPKAIEQLYATLKLHIGQNHGKVAFVAPAKGTIDRM
AERLREHGVSARVATPGLEPVEGAVTLYQALSHAGLVFGGPNLVVVTETDVTGNRVGDIA
GAKRRAPRRRNRVDPLALQPGDFVVHDTHGIGKFVKMAERTVKAGDEDSRREYIVLEYQP
AKRGQPGDQLWVPMESLDLLSKYTGGEKPSLSKMGGSDWKSTKRKARAAVREIAGELVEL
YAKRQAAPGHAFAPDTPWQHEMEDAFPFVETEDQLTAIEAVKSDMEKPTPMDRVIVGDVG
FGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHFSTFNQRMDGFGVTVRELSRFTTAAE
SKEIISGLADGSVDIVIGTHRLLQTGVQWKNLGLIIVDEEQRFGVEHKEHIKALKSHVDV
LTMTATPIPRTLEMSLTGIREMTSITTAPEDRHPVLTYVGPQEDKQVAAAIRRELLRDGQ
VFYIHNKVSDIEKTARQLRELVPEARIVVAHGQMSEQVLEQTVQGFWNRDYDVMVCTTIV
ETGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRERAYAYFLYPKDKTLTETSYDRLA
TIAQNNDLGSGIAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVSEAVETFKGLMS
GEPVDATDKGPKEIRVDLPVDAHIPETYINSERLRLEVYRKLAEARDDDALTAAADDMID
RFGALPREVEHLMAVARLRNQAREVGVSDILTQGSRIKLHPVELPDSKQVRLKRLYPGAN
FRAAAKALQVPMPREGGAKRALNAPNLRDTELLQWVADFMTEMLDAPKISVAGAAKAEEK
PKKEVFSVSE
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaccaccccgcccgtgctgggcggtttgctcacggcggcgctgacggacccg
aagttgaaggggttggtcacgcacgtgggcgaggattcgttgcacgtcacgggcatcgac
caggtgcgctcttgggcggccggtgcgattgcgcgggaggcgccggtgcttttggtcacg
gctaccggccacgaggcggaggatctcgccgccgagctgaaggccattttgggcgaagag
aaggtcgcgcagttcccggcgtacgagacgctgccgcacgagcgtctttcgccggcgccg
gacattgtggggcgccgctcgaaggtgctgtgggagatgccgcgcgtgatcgtcgcggcg
gcgcgcgcggtgtgccagccggtgctgccgcctgtccagccgatcagcatcgcggtggac
caggagcacgactttgaggatctgaccgcgaagctggtgcacttcgcgtataaccatgtg
gacatggtggcttcgcgcggcgagttcgccacccgcggcggcatcatcgatgtgttcccg
accaccgcgcaaaacccggtacgcatcgagttctggggcgacgaggtcaccgacatccgc
tccttcgccgtcgcggaccagcgcaccatcgaggaggtgcggtcggtggacctgcaccct
gcgaggcaattgcttatcgacgatgccgtggccgccaaagtcgacgaactcgcgcggaaa
ttcccctccaacccgacgctgtcgtcgctgctggcgcgcatctcggagaagcagccggcc
gatggcatggaggcgctcatcccggcgctgacggacaagcagtactcggtgctgccggag
ctcatgcccgccggctccgttgtgttagtgaccaacccggagaaggtgcgcacccgcatc
gctgatttggaggcgacggaccgcgagttcctcgaggccggctgggaggcagccgccatg
ggcgccgaggggcctgtggtggtggagggcctggacgtgtccgcctcgtcgtaccgctcc
tacgagtcgctggaggtttccgcctccaaggccggcaacgcctggtggacgttcgccccg
cccggcatgttcgccgccgacgacgcagacacgctgccgctggagttcgaggccgcgcct
gccccgaagggcgacccgaaggcgattgagcagctctacgccacgctcaagctccacatc
ggtcaaaaccacggcaaggtcgcgttcgtggcgccggcgaagggcacgatcgaccgcatg
gcggagcgcctgcgcgagcacggcgtatccgcccgcgtggccacgcccggcctggaaccc
gtcgagggcgcggtgacgttgtaccaggccctgtcgcacgcgggcctggtcttcggcggg
ccgaacctggtcgtggtcaccgaaactgacgtcaccggcaaccgcgtgggcgatatcgca
ggtgctaaacgacgggctccgcgccgccgtaaccgcgtcgacccgctcgccctgcagcct
ggcgatttcgtggtgcacgacacccacggcatcggcaagttcgtgaaaatggcggagcgc
accgtcaaagccggcgacgaggactcgcgccgcgagtacatcgtgctggagtaccagccc
gccaagcgcggccagcccggcgaccagctttgggtgccaatggagtcgttggacctgctg
agtaagtacaccgggggcgagaagccgtcgctaagcaaaatgggtggctccgactggaaa
tccactaagcgcaaggcgcgcgccgcggtccgcgagatcgcaggcgagttggtggagctc
tacgccaagcgccaggccgcgccggggcatgcgttcgcgccggacaccccgtggcagcac
gagatggaggacgccttcccgttcgtggagaccgaagaccagctcaccgccatcgaagca
gtgaagtcggacatggaaaagcccaccccgatggaccgcgtcatcgtgggcgacgtgggc
ttcggcaaaaccgaggtcgccgtgcgcgccgcgttcaaggcggtccaggacggcaagcag
gttgcggtactcgtgcccacgacgcttctggcccagcagcacttctccacgttcaaccag
cgcatggacggcttcggcgtgacggtgcgcgaactgtcgcgttttaccaccgccgcggag
tcgaaggagatcatctccggacttgccgacggttccgtggacatcgtcatcggcacccac
cgcctgctgcagacgggcgtgcagtggaagaacctcggcctgatcatcgtggacgaggag
cagcgcttcggcgtcgagcacaaggagcacatcaaggcgctgaaatcgcacgtggacgtg
ctgaccatgaccgcaacaccgatcccgcgcaccctagagatgtctttgaccggcatccgc
gagatgacctccatcaccaccgcgccggaggaccgccaccccgtgctgacctatgtcggc
ccgcaggaagacaagcaggtcgccgccgcaatccgccgcgagctgctccgcgacggccag
gtcttctacatccacaacaaagtctccgacattgaaaagaccgcccgccagctgcgcgaa
ctggtaccggaggcgcgcatcgtcgtcgcccacggccagatgagcgagcaagtgctcgaa
cagacggtgcagggtttttggaaccgcgactacgacgtcatggtctgcaccaccatcgtg
gaaaccggcctggacatcgccaacgccaacaccctgatcgtggaaaacgcccagaacatg
ggtctttcccagctgcaccagttgcgcgggcgcgtggggcgttcccgcgagcgcgcctac
gcgtactttttgtacccgaaggacaaaacgctcacggagacctcctacgaccgcctggcc
accatcgcccagaacaacgacctaggctccggcatcgccgtggcgcaaaaggatctggag
atgcgcggcgccggcaacgtattgggcgccgagcagtccggccacatcgccggggtgggc
tttgacatgtacgtgcgcctggtcagcgaggcggtggaaaccttcaagggactcatgagc
ggcgagcctgtcgacgccaccgacaagggccccaaggaaatccgcgtggacctgcccgtg
gacgcgcacatcccggagacctacatcaactccgagcggctgcgcctggaggtctaccgc
aagctcgccgaggcgcgcgacgacgacgccctgaccgccgccgccgacgacatgatcgac
cgttttggcgcactgccgagagaggtcgagcacctcatggctgtggcgcggctgcgcaac
caggcccgtgaggtgggtgtttccgacatcctcacccagggcagccgcatcaagctgcac
ccggttgagctgccggactccaagcaggtgcgcctgaaacgcctttacccgggcgcgaac
ttccgcgccgcggccaaggcgctgcaggtgccgatgccgcgcgagggcggcgcgaagcgc
gccctgaacgcgccgaatctgcgcgatacggagctgctgcaatgggtggccgacttcatg
acggagatgctcgacgcgccgaagatttcggtcgcgggggccgccaaagctgaggagaag
ccgaagaaggaggtgttctccgtcagcgagtag
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