Corynebacterium afermentans subsp. lipophilum: CAFEL_04090
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Entry
CAFEL_04090 CDS
T09361
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CAFEL_04090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_04090
Enzymes [BR:
cafe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CAFEL_04090
DNA repair and recombination proteins [BR:
cafe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CAFEL_04090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WJY58595
LinkDB
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Position
844626..846911
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AA seq
761 aa
AA seq
DB search
MGNDQKVRVGGRELTVSNLDKVLYPATGTTKADVMRYYQAVAEVLIPQANRRPVTRKRWP
EGVDEQSFFRKDLEDSAPEWVPTGTIQHTTSVNAYPLLDGSATLAWLSQVAALELHTPQW
RFGADGKPQNPDRLVLDLDPGPGVELHNTAEIALICREILEDMGLTCVPVTSGSKGIHLY
ASLDGQSDADAVTKVAKTLAQHLQRAHPDRVTAAMAKAERKGKVFIDWSQNNGKKTTISP
YSLRGRERPTVAAPRTWEEIADPVLRQLELDEVIARVEDGLDPIAVLGAPGEDRLATYRS
MRDKTKTGEPVPDAAPAPRDGEPIFVIGEHDASHLHWDFRLERDGVLVSWAVPKGPPLET
DITRLAVQTEDHPIEYAEFEGVIPKGQYGAGTVKIWDIGTCEIEKWREDEIIAILHGRDG
GGLGGIPRRFALIRTDEKNWLLKLTRDQPSAAAETTPLAPMLPTAATRGDITLEQHDGTE
FAYEMKWDGYRILADVGGTVRLRSRSGKDYTHLFPHTDELAHLLADGGCLDGELVALDAN
GNPDFSALHRADQHGAEAQLRYMVFDLLRLGSRDLTGTPWHARRELLERLDETEHVVIPP
ATTGSFDTAWRAAEELGLEGVVAKRTDAEYAPGERSRAWLKVKRALHQEVVVVGVRTGKR
GIASLLVAVPDEDGELRYAGRVGTGFSNSQLADIGRKLRRVERKTPPIDIPASDASDAWW
VTPKFVAEVQLAGATVDKKVRQASWRGWREDKDPSEVRWEV
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatgaccaaaaggtgcgcgtcggcggccgcgagctcaccgtgagcaacttggac
aaggtgctctacccggccaccggcaccaccaaggccgatgtcatgcgctactaccaggca
gtcgccgaggtgctcatccctcaagccaacaggcggccggtgaccaggaagaggtggccc
gaaggcgtcgatgagcaaagcttcttccgcaaagacctcgaggattcggcgcccgagtgg
gtgccaaccggcaccatccaacacaccacaagtgtcaacgcctatccgcttctcgacggc
tccgccaccctcgcgtggctttcccaagtcgcggcactggagctgcacaccccgcagtgg
cgcttcggcgcggacggcaaaccgcaaaatcccgaccggctggtgctggacctagacccg
ggccccggcgtcgaattacacaacaccgcagaaatcgcattgatttgccgcgaaatcctc
gaagacatggggctgacctgcgtgccggtgacctccgggtccaaaggcatccacctctac
gccagcctggacggccaaagcgacgccgatgcggtgaccaaggtggccaagacccttgca
cagcacctgcagcgcgcgcacccggatcgcgtcaccgccgccatggcgaaggcggagcgc
aaaggaaaagtgttcatcgactggagccagaacaacgggaagaaaaccaccattagcccg
tactcgctgcgcgggcgcgagcgccccacggtggcggccccgcgcacgtgggaggagatc
gcggacccggtgctgcggcagctggagctcgacgaggtcatcgcgcgcgtcgaagacgga
ctcgaccccattgcggtcctcggcgcgccgggggaggaccggctggccacgtaccgctcc
atgcgcgacaaaaccaaaaccggcgaaccggtgcccgacgccgctccggccccgcgcgac
ggcgagccgatcttcgtcatcggcgagcacgacgcctcccacctgcactgggacttccgc
ctggagcgtgacggggtgctcgtctcctgggccgtgccgaagggcccgccgctggaaacc
gacatcacccgcctggccgtgcagaccgaggaccacccgatcgaatacgccgagttcgaa
ggcgtaatcccgaaaggccagtacggcgcgggcacggtgaaaatctgggacatcggcacc
tgcgagatagaaaagtggcgcgaagacgagatcatcgccatcctccacggccgcgacggc
ggcgggctgggcggtatcccgcgccgcttcgcgctgatccgcaccgacgagaagaattgg
ctgctcaagctcacccgcgaccagcccagcgccgccgccgaaacaacgccgctggcaccg
atgctgcccaccgcggccacccgcggcgacatcaccctcgaacaacacgacggcaccgag
ttcgcctacgagatgaagtgggacggctaccgcatcctcgcggacgtcggcggcacggtc
cgcctgcgcagccgcagcggcaaggactacacgcacctgttcccacacacggacgagctt
gcgcacttacttgccgacggcggctgcctcgacggcgaactcgtcgccctcgacgccaac
ggaaacccggacttctccgccctgcaccgcgccgaccagcacggcgcagaggcgcagctt
cgctacatggtcttcgacctactgcgcctgggtagtcgggacctgaccggcacaccctgg
cacgcccgccgcgagctgctcgagcgtctcgacgaaaccgagcacgtggtcatcccgccc
gcaaccaccggctccttcgacaccgcatggcgcgccgccgaggaactcgggctggagggc
gtggtggccaagcgcaccgacgccgaatacgcgccgggagagcgctcccgcgcgtggcta
aaagtcaagcgcgccctgcaccaggaagtggtggtcgtgggcgtgcgcaccggcaagcgc
ggcatcgcatcgctgctggtcgcggtgcccgacgaggacggtgagctgcgctacgcgggg
cgtgtgggcaccggtttttccaactcccagctcgccgacatcggccgcaagctgcgccgc
gtcgagcgcaagaccccgcccattgacatccccgcttccgacgcgagcgacgcctggtgg
gtgaccccgaagttcgtcgccgaggttcagctcgccggcgccaccgtagacaaaaaagtg
cgccaggcatcatggagaggttggcgcgaggacaaggaccccagcgaggttcgctgggag
gtctga
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